BAC Information

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BAC

Clone NameMSMg01-049J18
Chromosome8 (Build37)
Map Location 54,405,474 - 54,405,962
singlet/doubletsinglet
Overlap genenone
Upstream gene1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049J18.T7 (MSMg01no049_j18.b1)MSMg01-049J18.TJ (MSMg01no049_j18.g1)
ACCAG279000AG279001
length1,3011,360
length of high quality
(start - end)
489 (122 - 610)328 (115 - 442)
definitionCHROMAT_FILE: MSMg01no049_j18.b1 PHD_FILE: MSMg01no049_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:48 2005CHROMAT_FILE: MSMg01no049_j18.g1 PHD_FILE: MSMg01no049_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATATGCGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCCACA
CCTTGGTAATCCACATTTGAGGCACTCTATAAACTTGCTTCCATTATCTT
TAGAACAAGACTACCGGCATTATTTGCCCAAACCCATAGGTACTAAACTA
TGCCTTTCTCTTTGACTCTTGATGCCCCCTGAACCCCTAAGACTCTGGGA
ACTGATCAAAAGCAGTCACATGGTCTTTCATTCATCTCTGTGTCACATCC
CACTGCCTCCTTTGGTTTCAGAATTTGGACCTTTCTAGTTGTTCTCTGAT
TCCTTCGAAGAACTGTTTATGTGCTGATTAGCTCTCACACTTAATTCAGC
AGAGGGTTACTCTGAAACAAAAAGTTTATTATGTCCATGAATACAACTGC
ACTGAAACTTTTCCATCCCTCAGTAACTTGCGCATCAATGAATGCAGACA
ACGTTCGTTGTTTTAGTCATCTAGCACCATGTTCCTCTTATTCTGTCTTT
AGCTTTTCTTTGCTATACTGTGACAATAGTCTTCAATTTACAACCTTACC
ACTAAACTACTAAAAGTTCATTTCATCACATCTAACATAAGATTTTCATA
ATGATTATATCGTTATGGACATGAATACACAGAAAGTTTCCTCCCAAGCA
CAGTTCAGAATTTTATATTTGGTACGACAGTCTTCTACTTATATAAGGCA
TTTTCTCCATTAAAAATAGTCAACTATGAATGAACTTTATCGATACTGCA
AATGTCTGTTGAAAATCTGATTCACAGTAACCCTCAACAAGTTCAAGCAT
TTCAACCTGCTTCTGACTGGCCTTCTTTATATCTGCCTATTCAAAATCTA
CTTGAAGCATCCATAACTTCATCTAACTTCAAGACCTAATCCCCCCAGCG
GGAACTCTTTATTCCCACCCCCCTAAATTATTTCCCTTGACAAAAAATGG
TGTCTTAATTGTCCTTCCAAGTCAAATAACTTTCATAGTTAATCCTTTTT
GACTTTTCACCCTATTGAAAGTTTCCAAGCCCTATTTCTGGGAAAATTAA
AATATTTTGAAAAACGCTCTGCCTGTTAAAAATTTAGCTCCCACTTGAAA
ATACTTTCTCCCCTTTATGTAAATAACAAATCTAATCCTTTTTTAAAATA
AAAAAGTGTTTTGTGGTCAACAATGGTTAAGCAAAGATTTAATTGCTATT
TTACATCATTCTACTCTTTTATATATTCACTAAATTTTGTTTCGCGGTAT
TACTCTTCCCTATTATTCCTTAGAACTNTCTCCATTTAGTTATTAAATTA
G
TTTTTAACAGTGAGCCTGGGGCGCCGGTCGCXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTTACACCANCTTTCTTCAAAGGACAGATCG
TGGAAACAGCCACTAAACAGGGACCCCGTGAAACTAACAGAAGTTATGAA
ACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAG
GATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCAT
ATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGT
CCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACA
ACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTT
CTCAATGATACCCTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTT
TTCAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATTGGACA
CAACGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAG
AAGAAACGGGAGACAGCCCATACTAGCAGCTTGACAACACATCTAAAAGC
CCTACAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAA
TAATCAAACTCAGGGGTGAAATCACCCAAGCGGATACAAGAAGAAATATT
CAAAGAATTTAACCAACGAGGAATTTGGTTCTTTGGGAACATCCCCAAGA
TAAGATAAACCCTTTAGCTAGACCTCCCTATAGGGTCCCGAAGACAAATT
CCTACTTAACAAAATCAAAACTGAAAAAGGGATACTTAACTACCACATCC
TGAAAAAAATCCAAAACAACCATCAAAATCTCTTCTACAAAAGGTCTATC
CTCAACAAAACTTGCAAAAACTGGAATGAAAAGGGACAAAACTCTCTGGA
ACGAAAACCCAGTTAACCAAAGTTTGAATTCGGGATTTCAAGTTTGAACC
TTCTTAAACATCCCCCATAATCCCCCTAAAGCAAAAAAAAAACCAGTTTT
TTAATATAATCCTCCCCTACCAACAATAAACCCCATGTACCCAAAATGGT
GTTTTAAGGCGCAAAAGTTCTTATATTAAACCTTCTCAAAAAAAATACTA
ATCTCCAAATTTTTGGCGCAAAATATATTTCTCCAAAAAAATAAAACCCC
CCCACCGAAACCTATACCCCAATTCTCTTTTTTTATAGAATCCCCCTTTA
TTCTTCCGATTATCCTCTAACCACTCCGAAATAGATATCCTCCACATATA
TATATAACATATCTCCTACGACTCAATTTTTTCCTTCTATTAGATATCTC
TAGTGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_j18.b1 MSMg01no049_j18.b1 CHROMAT_FILE:
MSMg01no049_j18.b1 PHD_FILE: MSMg01no049_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:48 2005
         (489 letters)



>mm_chr8_54405274_54406162
          Length = 889

 Score =  770 bits (398), Expect = 0.0
 Identities = 467/490 (95%), Gaps = 2/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgcccaaacccataggtactaaactatgcctttctctttgactcttgatgccccctg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgcccaaacccatagttactaaactatgcctttctctttgactcttgatgccccctg 260

                                                                       
Query: 61  aacccctaagactctgggaactgatcaaaagcagtcacatggtctttcattcatctctgt 120
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 aacccctaagactctggaaactgatcaaaagcaatcacatggtctttcattcatctctgt 320

                                                                       
Query: 121 gtcacatcccactgcctcctttggtttcagaatttggacctttctagttgttctctgatt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcgcatcccactgcctcctttggtttcagaatttggacctttctagttgttctctgatt 380

                                                                       
Query: 181 ccttcgaagaactgtttatgtgctgattagctctcacacttaattcagcagagggttact 240
           |||||||||||||||||||||||  ||||||||| | |||||||||||||||||||||||
Sbjct: 381 ccttcgaagaactgtttatgtgccaattagctcttaaacttaattcagcagagggttact 440

                                                                       
Query: 241 ctgaaacaaaaagtttattatgtccatgaatacaactgcactgaaacttttccatcc-ct 299
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 441 ctgaaacaaaaagtttattatgtccatgaatacaactgaactgaaacttttccatcctct 500

                                                                       
Query: 300 cagtaacttgcgcatcaatgaatgcagacaacgttcgttgttttagtcatctagcaccat 359
           |||||||||| |||||| |||| |||||||| ||| ||||||| |||||||||| |||||
Sbjct: 501 cagtaacttgggcatcactgaaagcagacaaggtt-gttgtttcagtcatctagtaccat 559

                                                                       
Query: 360 gttcctcttattctgtctttagcttttctttgctatactgtgacaatagtcttcaattta 419
           |||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 gttcttcttattctgtctttaacttttctttgctatagtgtgacaatagtcttcaattta 619

                                                                       
Query: 420 caaccttaccactaaactactaaaagttcatttcatcacatctaacataagattttcata 479
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 620 caaccttaccattaaactactaaaagttcatttcatcaaatctaacataagatttccata 679

                     
Query: 480 atgattatat 489
           ||||||||||
Sbjct: 680 atgattatat 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)