Query= MSMg01no050_n10.b1 MSMg01no050_n10.b1 CHROMAT_FILE:
MSMg01no050_n10.b1 PHD_FILE: MSMg01no050_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:41 2005
(586 letters)
>mm_chr8_53727459_53728443
Length = 985
Score = 903 bits (467), Expect = 0.0
Identities = 551/587 (93%), Gaps = 15/587 (2%)
Strand = Plus / Plus
Query: 1 acatataaataaaattcaaaatttgtatgccttataaaataatatttactttgattcttt 60
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct: 201 acatataaataaaattcaaaatttgtatgtcatataaa-taatatttactttgattcttt 259
Query: 61 gaagtttcatataccattctatttatgtaaaatatgtaaaacaaaaaacataagcttaac 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 260 gaagtttcatataccattctatttatgtaaaatatgtaaaacaaaagacataagcttaac 319
Query: 121 aaaataagccccgtgaatttaatttgcttcttgactacctccaaaatgttacttcaataa 180
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 aaaataagccctgtgaatttaatttgcttcttgactatctccaaaatgttacttcaataa 379
Query: 181 ctgccctcatatttagtaaaattaatacaagttgtgtggtttttgacttcagcaatgggg 240
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 380 ctgccctcatatttagtaaaattaatataagttgtgtggtttttgtcttcagcaatgggg 439
Query: 241 catattacttctggagagtaactttttgtcttgccgacaccttgagttcttttattaacc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 catattacttctggagagtaactttttgtcttgccgacaccttgagttcttttattaatc 499
Query: 301 cctgtgggactctttttggccaacaactctgttggacataagacagtcccagtgctcaaa 360
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 500 cctgtgggacactttttggccaacaactctgttggacataagacagtcccagtgctcaga 559
Query: 361 gcttccattggtgacaactgatagaagttgggactctgcctcccttattatcagaaacct 420
|||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 560 gcttccattggtgacaactgatagaagt-------------cccttattattagaaacct 606
Query: 421 gattagggtcacgttgatatcttttagggtattccaaaaacatcacttttttacacaatc 480
|||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 607 gattagggtcacgttgatatattttagggtgtttaaaaaacatcacttttttacacaatc 666
Query: 481 cctccaatgtccctcaactttagttggatttctccacatttctttcttcaaccccctgtc 540
|||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct: 667 cctcaaatgtccctcaactttagttggcgttctccacatttcttccttcaaccccatgtc 726
Query: 541 ccctcctttttgtcatctgtttctctctttcccttaaccc-acccac 586
|||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 727 cccttctttttgtcatctgtttctctctttcccttaaccccacccac 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_n10.g1 MSMg01no050_n10.g1 CHROMAT_FILE:
MSMg01no050_n10.g1 PHD_FILE: MSMg01no050_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:41 2005
(586 letters)
>mm_chr8_53874913_53875901
Length = 989
Score = 938 bits (485), Expect = 0.0
Identities = 558/585 (95%), Gaps = 11/585 (1%)
Strand = Plus / Minus
Query: 1 taagactggtgcttacttcccttctctgc---cattatgcatagcacatcttatcagtag 57
||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||
Sbjct: 781 taagactggtgcttacttcccttctctgctagca--a-gcataacacatcttatcagtag 725
Query: 58 gaagtttacccaagagggattgtgcttctcccttgcatatgcaccagcttgatatgtcct 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaagtttacccaagagggattgtgcttctcccttgcatatgcaccagcttgatatgtcct 665
Query: 118 cctcaaatgca-tttatcatcgaatatttcagtatatctttgtgatgagaactgaagtga 176
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cctcaaatgcattttatcatcgaatatttcagtatatctttgtgatgagaactgaagtga 605
Query: 177 ttaagcttgcccacttcaatttaaaatcagatttaccaatgtggctcagttaatcagaaa 236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 604 ttaagcttgcccacttcaatttaaaatcagatttaccaatgtgactcagttaatcagaaa 545
Query: 237 tgttttaaaaatattcttgttcttctcttccggcgcaatggaaaaaaagtaaaatgctaa 296
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 544 tgtttttaaaatattcttgttcttctcttctggagcaatggaaaaaaagtaaaatgctaa 485
Query: 297 gacatactttgtgatgaatgataaagtgatttaagttcttagtacatcattttgaagcat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gacatactttgtgatgaatgataaagtgatttaagttcttagtacatcattttgaagcat 425
Query: 357 gagatatcccaaggcataaagatgggtatattatttcacaccttaaattaattaaataca 416
|||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 424 gagatatcccaaggcataaagatgggtatattatttcaaatcttatattaattaaataca 365
Query: 417 tacagattcctgaatattaattgtgttgccttataactccagccctaataaatatacttt 476
||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 364 tacagattcatgaatattaattgtgttgccttataactcaagcactaataaatatacttt 305
Query: 477 acattgtatgccctgtttaatctttattgtttataatcattcactgctttatg-aaaaat 535
| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 304 atattatatgccctgtttaatctttattgtttataatcattca-tgctttatgaaaaaat 246
Query: 536 aataccatcgaaaa--aacccatatttttattgttttaaggccta 578
|||| ||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 245 aatatcatagaaaaataactcatatttttattgttttaaggccta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 989
Length adjustment: 10
Effective length of query: 576
Effective length of database: 979
Effective search space: 563904
Effective search space used: 563904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
