BAC Information

Click to search

BAC

Clone NameMSMg01-051D11
Chromosome8 (Build37)
Map Location 78,143,414 - 78,143,819
singlet/doubletsinglet
Overlap gene1700007B14Rik
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229
Downstream geneLOC666036, LOC100039185, EG631594, LOC666226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051D11.T7 (MSMg01no051_d11.b1)MSMg01-051D11.TJ (MSMg01no051_d11.g1)
ACCAG280051AG280052
length1,2651,218
length of high quality
(start - end)
357 (45 - 401)406 (76 - 481)
definitionCHROMAT_FILE: MSMg01no051_d11.b1 PHD_FILE: MSMg01no051_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:35 2005CHROMAT_FILE: MSMg01no051_d11.g1 PHD_FILE: MSMg01no051_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGGCTTTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGAGCCTTATTTTTATAGAGGTTATTTGATTTTC
TGGAATCCACCTTCTTGAGTTCTTTATAGACCTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCCTTCCCAATCTCTTGGTGGCCTTTT
TGTGTTATTGACGGTGTCTTTTGCCTTACAGACAGTTTGCAGTTTCATGA
GGTCCCATTAGTCAATTCTCGATCTTACAGCACCAGCCATTGCTGTTCTA
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTT
CTCCTCTATAAGGTTCAGTATCTCTGGTTCTATGTGGAGTTCCTTGATCT
TTTTATACCTGACCTTACCACTAGGAGATAGGAATGGATCGATTTGCATT
CTTCTACATAATACCAACCAGTTGTGCCAGCTCCATTCTGCCGATAACGC
TGTCTTTTTTCCCTTGTATGGTTTTAGCTCCCTTGTCTTATATCATGTGA
CTCTTCTTGTTGTGTTTTTTTTCTGTTCTTTTTTTTTTCTTCTTTTTTTT
TTTTTTCTTTTTTTTTCTTTTTTTTTTTCTTTTCTTTTTCTCTCTTTTTT
TTATTTCTCTTCTTTTTCTTCTTTTTTTTTATCCCCTTTCTTTTCTTTTT
TTTCCTTTCCTTTTTTCTTTTTTTCCTCTTCTTCTTTCCCTTTTTTTCTC
TTTTTTTTTTCTCTCTTTTTCTTTTTTTTTTCTCCTCTTTCTTCTCTTCT
TTTTTTTTTTTTTCTTCCTCTTTTTTATTTCTTTTTTTTATCTTTTTCTC
TTTTTCTTTTTCTTTTTTTTTCTCTTCCTTCTTTTTTTCTTCTCTTTTTT
CCCTTTCTTTTTTTTTTTTCTTTTTCTTTTTTTTCTTTTCTTTCTTCTTT
CATTTTTTTTTTCTTTTCTTTCTTTTTTTTTCTCTTTCCTTTTTTCTTTT
TTTTTTTTCTTCCTTTTCTTTTCTTTTTTTCATTTCTTCTTTTTTCTTCT
TCTTTTTTCATTCTTTCACTTTTTTATTTATTTTGTTTTCCCTTCTTATT
TCTTCTTTTTTCTTTCTTTTTTTTTTCTCTCCCTTCTCTTCTTTTTTCTT
TCTTTCTTTCTTTCTTTTTCTTTCCTTTTTTCTCTTTTACTTCTTCTTTT
CTTTNCTCTTTTATCTTCCTCCCTTTCTTCTTCTCACTCTTTCTAGTTCG
TTATCTCTCCATCCT
TTTTTNTTATCTCGTGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTACATTGAATTATCAGCACACCT
AATTATAAAACAGCACATTTGTTAAACATTTACCATAAAAAAATCAATAA
ATAAAATATTTAAAACTTCTTATCCAGTTATGTTGTCTTAATATTATGTT
TGCCAATGACATAGACTAACTGCTTTCATTTTCCCCAGTACTCCAGATAC
CACATGCATACATACTTACTTCAACCTCCTTCAAAGGGAAAAATACTCAT
TTCTCCCTGACAATTGTAAAGAATATTTATTCTTCTCCACCCCACCCCTT
GCCCCCACCTCAGGAGTTCTCATTTATAATGTAAAAAACAGTTTCAAGAA
TTAAACTGAGTCAATGTCACTCAGACTTAGTTTTCTTTTTTTTTCAATTA
AAAAAACATTTATTTCATAAAACAAATAAAACCCAAAATTAAAACAATCT
GCATTTCCATGTAACTCCGAGCCCAACTGAAATATTTTCAATTTCACAGT
CCCAATTTAAAATTTACTTGATATTTTTTAATTTTTATTTTTATTTTTCT
TCTTTTTATTACATATTTTACTTTCTTTACTTTTCCCTATGCCACCCTCA
ATTTCTTTCTCTTGTTTCCTTATTTCTTCTTCTTTCTTTTCTCCTTTTCT
TTTTTTCTTCCCCTTCCTTTGCTCTTTCTTTTTTTTTTCTTTCTCTTCTT
TTTTTTTTCTTTTTTTCTTTCCTTTTCCTTTTTTTTCCCTTTTTTTTTAT
TTTTTCTTTTTTCCTTTCTTCTATTTCCTCTTCTTTTTTTCCTTTTTCTT
TTTCTTCTCTCTTTCTTCTTTTCTCCATCCTCTTTTTTTCTCTCTTTTTT
CCTTTTTTTTTCTTTTATTTTTTTTTTTTTCTTTTTTTTTTTTCCCTTTT
TTTTTTTTTTCTTTCCTCTCCTTATCTTTTCTCTTTTCTTTCTTCTTTCT
TCCTCTCCTTTTCCATTTTTCTTTTTCTCTCTCTTCTTCTTTTTTTTTTC
TTTCCCTTCTATTCCTCTTCTTTTCCTTCTTGTTTTTTTCTTCTATTTAT
CTCATCTCTTTTTTTTCTCCCTATTTTATTCTTCCTTACTATTTTTTTAT
TTTTCCCCCGTTTTTTTTTTTTTTATTTTTTTTTTTTACCCCATTTTTTT
TATTTTATTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_d11.g1 MSMg01no051_d11.g1 CHROMAT_FILE:
MSMg01no051_d11.g1 PHD_FILE: MSMg01no051_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:35 2005
         (406 letters)



>mm_chr8_78143124_78143929
          Length = 806

 Score =  762 bits (394), Expect = 0.0
 Identities = 403/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacattgaattatcagcacacctaattataaaacagcacatttgttaaacatttacca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 696 tttacattgaattatcagcacacctaattataaaacagcacatttgttaaacatttagta 637

                                                                       
Query: 61  taaaaaaatcaataaataaaatatttaaaacttcttatccagttatgttgtcttaatatt 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 636 taaaaaaatcaataaataaaatatttaaaacttcttattcagttatgttgtcttaatatt 577

                                                                       
Query: 121 atgtttgccaatgacatagactaactgctttcattttccccagtactccagataccacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 atgtttgccaatgacatagactaactgctttcattttccccagtactccagataccacat 517

                                                                       
Query: 181 gcatacatacttacttcaacctccttcaaagggaaaaatactcatttctccctgacaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gcatacatacttacttcaacctccttcaaagggaaaaatactcatttctccctgacaatt 457

                                                                       
Query: 241 gtaaagaatatttattcttctccaccccaccccttgcccccacctcaggagttctcattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtaaagaatatttattcttctccaccccaccccttgcccccacctcaggagttctcattt 397

                                                                       
Query: 301 ataatgtaaaaaacagtttcaagaattaaactgagtcaatgtcactcagacttagttttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ataatgtaaaaaacagtttcaagaattaaactgagtcaatgtcactcagacttagttttc 337

                                                         
Query: 361 tttttttttcaattaaaaaaacatttatttcataaaacaaataaaa 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tttttttttcaattaaaaaaacatttatttcataaaacaaataaaa 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)