BAC Information

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BAC

Clone NameMSMg01-051J19
Chromosome8 (Build37)
Map Location 91,684,674 - 91,745,055
singlet/doubletdoublet
Overlap geneEG384862
Upstream geneHeatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051J19.T7 (MSMg01no051_j19.b1)MSMg01-051J19.TJ (MSMg01no051_j19.g1)
ACCAG280322AG280323
length1,2771,321
length of high quality
(start - end)
370 (39 - 408)200 (76 - 275)
definitionCHROMAT_FILE: MSMg01no051_j19.b1 PHD_FILE: MSMg01no051_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:33 2005CHROMAT_FILE: MSMg01no051_j19.g1 PHD_FILE: MSMg01no051_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,684,674 - 91,685,024)(91,744,856 - 91,745,055)
sequence
NTTTTTTTGTNNNGCCATTTCGGCGCTATAGACTACTATAGGGAGAGGAT
CCGCGGAATTCAGATCAAGCCTTAGATCTTTTGACTGGCTCCTACCTCCC
TGCTTTTTTAGATAGCGGTATCTATCTAAGTATTCTTTCATGCCTTTGTA
TTTGCTTTTCTGTTTACACCCCTGTCCTTCCTCGGAGTCTCTCACAAGCG
CTCCATCCCTTCAGTTCTGGGTCTGAAGCATTCACAGTGCACTCTAGTTC
AGTCTAGTTGGATGGCTGCAGTTCAGTTGGATGGCTGCCTGGTGTTCTAG
AACATCGGGGTTCCTACGCACTGTCTTCTTCATGGTTCCAGGCTTAGTGT
GTGTGTGCTGATTACTTTAGTATCGCTGATAAAACAAAACAAAACAAAAC
AACAACTTTTTATACCTGACAGAAATACTTAAGGGAAGAAAGGTTTACTT
TGGTCTGTGGTTTCTGAGGGTTCAGCTCTGCTCACTTGGCCCCATGCGCC
CTGGCAGAGTATTACACAGGAAGGATGTTTGCAGAGACTCCTCTATTCAC
AGTATGACTGACCGCAAACCGTGTACCATGCACTATGGGCTGGTCTGCCT
CTAGTGATGCTCTCCTGACAGCCAGCCTTCTCCTATTGGTTCTATATGCC
TCTTCTCTATTTATCATCTGTGTTGCATCAATATTTTGAGTGCCCTTATT
TGTTGCTCTTATGCTTTTGTTTCCTTTATTTTCTTTGACTGATTGATGAT
TTTTTTTCTTTGTCTACCTTTTTCTTTATCTCATATTAATTAATTTTTAT
CTTTTTGTGTTTTATTTCTCACTCTTTTATTTAATTTTTCTATCGTTCTT
TTTTTTTTCTTTTCTCTTATTTTTTTTTTTTTTTTTCTTTTTTCTTTTTT
TTCTTGTATCCCTTCCCTTTCATTTTTTTTTTTATTTTTCTTTTGTCTTG
TATTTTCTTTATTTCTTTTTCTTTTTCTTTCATTATTTTTCTTTCTTCTA
TTTATTTTTTTTCTCTTTTTTACTTTTCTCATCTTTATTTTCCTCTCCTT
CTTTTTACTTTCTTCTATCTTCTTTCTTTTTTTCTTTCTTTTTTATTTTG
CTTTAATACTTTCTTATTTTTACTTTCTTATTTTATTTTTCCTCATATTT
TTTTTCTTTTTTAATTTTCTTTCTCCTCTTATTTCTTTCCTTGTCTTTTT
CTCTTTTTCTTCTTCTTCACTTCTTCTCTTTTTATTTCTATTTCTATCCT
ATTCTTTTTTTCCTTATTTTACCCTCT
GTGTTCTTTTNNAGGCTGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGCATCCTGCTTCTTGACCA
GTCAAGGGTCTCAGTGAAGGAAAGCAGACTCCCCGAGGGAGGAAGGGGCG
TTGGTGCCAAGGCAGAGCCATCCCCCTTCCTTCTGCAGCTTTGATGGGCT
GCCAAGTCACTGCCTCCCCTCTGCAATCCCAGGCTTCATGTTTTACACAA
GCCTTTCCAAAAAGCCAGGAGCGTATACAACCAGGAAAACAAACAGTTGG
AAGCAGCAGCTCTGTCAAGGCGAACCCCCCGCCGTGGCTGGCTACTTTCC
CAGATAAGATATCTGCTCACCTTTCATACATGTCAGGCTGGAAATAAAAT
CCATTTTATATTGAGGTCTCGTTTCCACGGTAGCAGGTGTGTACCCCTTA
CTTACCCTATTGACCACTAACATACGTACTGTTTCCCTCGCTTCCTGTCG
CTGTTGTCCCTCCTTGTCTTTCGCTATTACCTCTACTTCCCTGATTCCCT
GATTCTCCCTTACTTTTATCTTTTTTTATATGTCTTTGTTGTCTCTCTGT
ATGTCCTCTTATTTGTTCCTTTGTTTCTTTTTTGTCCTTTTGTTCGTATC
TTTCCCCTTTTCTTTTATTTCTTTTCCATCTTGTTTTTCTTTTCATTCTT
TTCTCTTCTTTTTTTTCTTTTCTTTCTTTTTCTTTTCTTCTTTCTTTCTT
TTTTCTTTTTTTCTCTTTTTCTTTTTTTTTTCCTTTTTTCCCTCTTCTTC
TCTCTTTTTTTTTCCTTCTTTTTTCTTCCTTTTCTTCTTTCCTCTTTTCT
TCTTTTTTTCTTCTCCCTTTTTTTTTCCTTTTTTCCTTTTTTTATTCTCC
CTCTCTTTCTTTTTTCTTCTTTTCACCTCTTTTCCCCCTTTCTTTTTTGT
TCTTTTTTTTTTTTTTTTTTTCTTTTCTTTTTCTTCTCTCTTTTTTTCTT
CTCTTTTTTTTCTTTCTTTTTCTTTTCTTTCTTTATCTCTTTTCTTTCTT
TCTCCTTTTCTTTCTCTTCTCATGTCTTTTTTCCCTTTCCTTCTTTTCTC
TCTTCTCTTTTCTTCCTTTTCTCTTTTTCCTTGTTCTTTATTTCCTTCGT
CTCTTTCTTCTTGCTCTTTCTTTTTTCTCATTTTCTCCTCTCTTCATTTT
TCTCTTTTCCTCTCTTTCTCTCTCTCTTCTTTTTCTCTTTCTTTCACCCC
CATTTTTTAGTATTGTTTTTTGTATTTTTTTTTACCCCCGTTATTATTTT
TTGTTTATTTANGTTATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_j19.b1 MSMg01no051_j19.b1 CHROMAT_FILE:
MSMg01no051_j19.b1 PHD_FILE: MSMg01no051_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:33 2005
         (370 letters)



>mm_chr8_91684457_91685226
          Length = 770

 Score =  671 bits (347), Expect = 0.0
 Identities = 350/351 (99%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattcagatcaagccttagatcttttgactggctcctacctccctgcttttttagatag 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattcagatcaagccttagatcttttgactggctcctacctccctgcttttttagatag 277

                                                                       
Query: 78  cggtatctatctaagtattctttcatgcctttgtatttgcttttctgtttacacccctgt 137
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cggtagctatctaagtattctttcatgcctttgtatttgcttttctgtttacacccctgt 337

                                                                       
Query: 138 ccttcctcggagtctctcacaagcgctccatcccttcagttctgggtctgaagcattcac 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccttcctcggagtctctcacaagcgctccatcccttcagttctgggtctgaagcattcac 397

                                                                       
Query: 198 agtgcactctagttcagtctagttggatggctgcagttcagttggatggctgcctggtgt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agtgcactctagttcagtctagttggatggctgcagttcagttggatggctgcctggtgt 457

                                                                       
Query: 258 tctagaacatcggggttcctacgcactgtcttcttcatggttccaggcttagtgtgtgtg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tctagaacatcggggttcctacgcactgtcttcttcatggttccaggcttagtgtgtgtg 517

                                                              
Query: 318 tgctgattactttagtatcgctgataaaacaaaacaaaacaaaacaacaac 368
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgctgattactttagtatcgctgataaaacaaaacaaaacaaaacaacaac 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no051_j19.g1 MSMg01no051_j19.g1 CHROMAT_FILE:
MSMg01no051_j19.g1 PHD_FILE: MSMg01no051_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:33 2005
         (200 letters)



>mm_chr8_91744656_91745255
          Length = 600

 Score =  371 bits (192), Expect = e-107
 Identities = 198/200 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcgaagcatcctgcttcttgaccagtcaagggtctcagtgaaggaaagcagactccccg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 400 ttcgaagcatcctgcttcttgaccagtcaagggtctcagtgaaggaaagcagactcccag 341

                                                                       
Query: 61  agggaggaaggggcgttggtgccaaggcagagccatcccccttccttctgcagctttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agggaggaaggggcgttggtgccaaggcagagccatcccccttccttctgcagctttgat 281

                                                                       
Query: 121 gggctgccaagtcactgcctcccctctgcaatcccaggcttcatgttttacacaagcctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 280 gggctgccaagtcactgcctcccctctgcaatcccaggcttcatgttttaaacaagcctt 221

                               
Query: 181 tccaaaaagccaggagcgta 200
           ||||||||||||||||||||
Sbjct: 220 tccaaaaagccaggagcgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)