BAC Information

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BAC

Clone NameMSMg01-052B08
Chromosome8 (Build37)
Map Location 111,503,286 - 111,661,519
singlet/doubletdoublet
Overlap genenone
Upstream geneAtbf1
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052B08.T7 (MSMg01no052_b08.b1)MSMg01-052B08.TJ (MSMg01no052_b08.g1)
ACCAG280665AG280666
length692689
length of high quality
(start - end)
255 (65 - 319)268 (71 - 338)
definitionCHROMAT_FILE: MSMg01no052_b08.b1 PHD_FILE: MSMg01no052_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:35 2005CHROMAT_FILE: MSMg01no052_b08.g1 PHD_FILE: MSMg01no052_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,503,286 - 111,503,528)(111,661,255 - 111,661,519)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATGCGCGGAATT
CTTTAGCTTTCTTTTTTTCTAGGGGGTGTTGTGTGTATTGTGAAATAGTC
ATAAAACCAAAACTCACATGGTCATTATCTCCTAGAAAAGGAGAGAATGA
GAAGAATAGAATTGCTAACAGTGTGATGGAAACGTTGTGTATTCTTTGTT
TTTGAACCAGTGTTCTCTGATCACTTCACATTCTATATCTAAGCATAGGG
GTACTGACTGTACAAAGCTCTGGACCCAGAAAAACACCTTTTTTTTTTTT
TTTTTTTGGGTTTTCCATACAGGGTTTCTCTGTATAGCCCTGGCTATCCT
GGAACTCATTCTGTAGACCAGGTTGACCTTGAACTCAGAAATCCACCTGC
CTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGTC
AGAAAAACACTTCTAGAACAGCCCCCATCTTCCATCTTCCCAAGGTCATG
ATATAGGTTTGGAACAAAAATACAGGTATTGTACCAACATTGATATTGTA
GAATAGTAAGACTTGACTAGTCCCTGAAAGTATAATTTTCCCACCTTACT
AATAAGTTGGGTAACAATAACGCGCTAATACAGTGTCATATGTCTATAAT
GACATTCCGAGCTTTTCATAGTTATTCTTAAAATGCCCCATA
CATACTGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCCCGAAATTCAGTATACTGTGAGTGAAAGTGAAAGCACTCT
AGGTACACTGACCATCACATCTGGTTTTTCCAGTAAAGCTGAGCATGCAC
ATATTCTCTGATGCCGTACGTCTGTTGCCAGATGGACATAGTGTATCCAA
TACAGCATACATGTGTGTGCATCTAGGCTCACATGCACAAGAATCTTCTG
GGTGGCATCGTTTGTAGCAGATGCTAATTTGCCTAACAGAATTGCCCTAC
AGCAGTGGACATGACGTGACAGCTGCATTCATTGCCGCAACCCAAACAGT
CAGAACTACATGACCAGAGGCCACCCCAAGACTGATGGGACTGAAGGGAT
CCCAGTGGGTGCAACATCTGTGCTGGTTGAGAAGGAAGAGCAGAGGCTAA
TGGTAAACCATGGTCCGAGGGAGCTTTTCAGGGGTCTTAATTCCCCGAGG
AGACCAGTGAATCCTCACAAGAGGGACTTATCCACAACTGGTAGATGTTA
GATTATTACCACACTTGCCAGTGGGGTTTCTATTGCCAGGTTCCTGAGGC
ATAAATGTGCTCCTGTGAAAGATCAACACAGCCCTTACTTTACATCCCAT
TCACTTACATACATATTATTAATCCTTCACTCTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_b08.b1 MSMg01no052_b08.b1 CHROMAT_FILE:
MSMg01no052_b08.b1 PHD_FILE: MSMg01no052_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:35 2005
         (255 letters)



>mm_chr8_111503086_111503740
          Length = 655

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctagggggtgttgtgtgtattgtgaaatagtcataaaaccaaaactcacatggtca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttttctagggggtgttgtgtgtattgtgaaatagtcataaaaccaaaactcacatgatca 260

                                                                       
Query: 61  ttatctcctagaaaaggagagaatgagaagaatagaattgctaacagtgtgatggaaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatctcctagaaaaggagagaatgagaagaatagaattgctaacagtgtgatggaaacg 320

                                                                       
Query: 121 ttgtgtattctttgtttttgaaccagtgttctctgatcacttcacattctatatctaagc 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtatattctttgtttttgaaccagtgttctctgatcacttcacattctatatctaagc 380

                                                                       
Query: 181 ataggggtactgactgtacaaagctctggacccagaaaaacacctttttttttttttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataggggtactgactgtacaaagctctggacccagaaaaacacctttttttttttttttt 440

              
Query: 241 ttt 243
           |||
Sbjct: 441 ttt 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no052_b08.g1 MSMg01no052_b08.g1 CHROMAT_FILE:
MSMg01no052_b08.g1 PHD_FILE: MSMg01no052_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:35 2005
         (268 letters)



>mm_chr8_111661055_111661722
          Length = 668

 Score =  451 bits (233), Expect = e-131
 Identities = 257/265 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatactgtgagtgaaagtgaaagcactctaggtacactgaccatcacatctggtttttc 60
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 465 gtatactgtgagtgaaagtgaaagcactctaggtacactgaccagcaaatctggtttttc 406

                                                                       
Query: 61  cagtaaagctgagcatgcacatattctctgatgccgtacgtctgttgccagatggacata 120
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 405 cagtaaagctgagcatgcgcatattctctgatgtcgtacgtctgttgccagatggacata 346

                                                                       
Query: 121 gtgtatccaatacagcatacatgtgtgtgcatctaggctcacatgcacaagaatcttctg 180
           ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 345 gtgcatccaatacagcatagatgtgtgtgcatccaggctcacatgcacaagaatcttctg 286

                                                                       
Query: 181 ggtggcatcgtttgtagcagatgctaatttgcctaacagaattgccctacagcagtggac 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 285 ggtggcatcgtttgtagcagatgctaatttgactaacagaattgccctacagcagtggac 226

                                    
Query: 241 atgacgtgacagctgcattcattgc 265
           |||||||||||||||||||||||||
Sbjct: 225 atgacgtgacagctgcattcattgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)