Query= MSMg01no052_c15.b1 MSMg01no052_c15.b1 CHROMAT_FILE:
MSMg01no052_c15.b1 PHD_FILE: MSMg01no052_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:41 2005
(564 letters)
>mm_chr8_9404871_9405834
Length = 964
Score = 963 bits (498), Expect = 0.0
Identities = 549/574 (95%), Gaps = 14/574 (2%)
Strand = Plus / Minus
Query: 5 gaattcttcccagttccttggcactagtaccacagtcctacctccttaatgtgcccatta 64
||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaattcttcccaggtacttggtactagtaccacagtcctacctccttaatgtgcccatta 571
Query: 65 aactctgtaaaatatgtttggtaaagccttcactttgctttctcttctttgtgtcaagtt 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 570 aactctgtaaaatatgtttggtaaagccttcactttgctgtctcttctttgtgtcaagtt 511
Query: 125 ttctgaagtccttgacaacagtagtgtttagcaggatggagctcactgtcttcactatga 184
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 510 ttctgaagtccttgacaacagtagtgtttagcaggatggagctcggtgtcttcactatga 451
Query: 185 acgaatccctctcttgacaggatttatttttatgaactccagtgtgtttattctgtgaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acgaatccctctcttgacaggatttatttttatgaactccagtgtgtttattctgtgaca 391
Query: 245 catgactctgctccacagtgtagggtctagtgtatactttattgtccaaccatattctaa 304
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 390 catgactctgctccacagtgtagggtcgagtgtctactttattgtccaaccatattctaa 331
Query: 305 atagcaggtatggatgctcctgatttcccatcaacagttttaggatttggttctctgttt 364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 330 atagcaggtatggatgctcctgatttcccatcaacagttttagggtttggttctctgttt 271
Query: 365 aggaattttaattgatacttggcaagaaagcataacaaacacctaaaatattttgactat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aggaattttaattgatacttggcaagaaagcataacaaacacctaaaatattttgactat 211
Query: 425 tttgtagttttgt-----tttgctttgttttgtttt---------aatctgaataactca 470
||||||||||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 210 tttgtagttttgtcttgttttgttttgttttgttttgtttttttaaatctgaataactca 151
Query: 471 cactgaaaataaacatttacaggcatggcataatgataaagacccaacaaagttcagagt 530
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cactgaaaataaacatctacaggcatggcataatgataaagacccaacaaagttcagagt 91
Query: 531 ccttataaaatagtcagcaggtgagctgcaggac 564
||||||||||||||||||||||||||||||||||
Sbjct: 90 ccttataaaatagtcagcaggtgagctgcaggac 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_c15.g1 MSMg01no052_c15.g1 CHROMAT_FILE:
MSMg01no052_c15.g1 PHD_FILE: MSMg01no052_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:41 2005
(358 letters)
>mm_chr8_9248814_9249567
Length = 754
Score = 592 bits (306), Expect = e-173
Identities = 337/358 (94%), Gaps = 19/358 (5%)
Strand = Plus / Plus
Query: 1 ttgcctttgtgatgtagacattcacaggagcacttccaaacaaacggtttcaaaaaaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ttgcctttgtgatgtagacattcacaggagcacttccaaacaaacggttt----aaaaaa 256
Query: 61 aaagacaacaattagacaattacacacacttacagaggtccagaccaatactcagaattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaagacaacaattagacaattacacacacttacagaggtccagaccaatactcagaattc 316
Query: 121 tactcagttactggatgcaggtttgctttcccaaaggcaggctatccttgttttggcttc 180
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 317 tactcagttactggatgcaggtttgctttccaaaaggcagg----------tttg----- 361
Query: 181 ttgtggtaaataaactcacttttcaaaggattcacattcatataaaagaatgacacaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgtggtaaataaactcacttttcaaaggattcacattcatataaaagaatgacacaggg 421
Query: 241 atcaaacggcctggctgtgttcactatctcttatggttgtctgggtacagtttgtagtag 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atcaaacagcctggctgtgttcactatctcttatggttgtctgggtacagtttgtagtag 481
Query: 301 gcaggtgcctacctaaaactcctctgactgccagacacagtcatttcctgtctggtca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gcaggtgcctacctaaaactcctctgactgccagacacagtcatttcctgtctggtca 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 754
Length adjustment: 9
Effective length of query: 349
Effective length of database: 745
Effective search space: 260005
Effective search space used: 260005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
