BAC Information

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BAC

Clone NameMSMg01-052D17
Chromosome8 (Build37)
Map Location 16,011,785 - 16,012,229
singlet/doubletsinglet
Overlap geneCsmd1
Upstream gene2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052D17.T7 (MSMg01no052_d17.b1)MSMg01-052D17.TJ (MSMg01no052_d17.g1)
ACCAG280774AG280775
length702701
length of high quality
(start - end)
---444 (68 - 511)
definitionCHROMAT_FILE: MSMg01no052_d17.b1 PHD_FILE: MSMg01no052_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:47 2005CHROMAT_FILE: MSMg01no052_d17.g1 PHD_FILE: MSMg01no052_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCT
TTGTTTATCTCCGACCCCATGTTTATTGATCATATTCTGATTTTCTGGAC
TCTAACTTCTTGAGTTCTTTGTATATATGGGATATTAATCTCCTATGAGA
CTTACGATTGGTATAGATCCTTTCCTCACCTGTTGGTGGCCCTTTTCTCT
TATTGACTGTGTCTTTTGCCTTATACATGCTTTGCAAATTTTTCATTCCA
CGTTTGAAGATTCTCCTTCATACAAGATTCTCCATTGCTGTCCTGTTTAA
TAATTTTTCCCCTGTGCCCATATCTTCCATGCATTTCTCCCCTTTCACCT
CTATCTATTTCCATGACTCTGAATTGACGATACTTCCTTGATCTTTCTAT
AATTTCTCTAATAATGGAGAATTGACTGGAGCATTTCTCCACCTGAGTCT
CTAGTTCCACATGTACCCGAAGACGATCTAGTCTACCATCATTGAAACGA
GAAACACTTGGTATCGCCCATATCGTATGCCCCATGAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAAGACCCGGACAAA
GA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTCTAAGACATGTCAGGTGGCTGAGCCACCTG
CCCCTATAGCTCCAGGGGATCCAACACTTCTAGCCTCCATGAGCACCCAC
AAACATGGTGCATACTATAGAGGCACAGGTGTATTCATTATTAAAAATAA
ATTGAAATTTAAAAAAAAGGAAAAGAAACAGAAAGAGAAGCAGACTGGGG
AGCAGCTGTATGCCTTGAAAGTCACCCATATTGCTGACTTTCTCAAGCCA
TTTAACCCTTCCCTGTAGTTTCCACAGCTTCCCCTAATAGGCTATCAGCT
AGGGACTGTGCTAAAGTACATGAGCCTGTGGGAGTTTCATATTGAAACCA
TGACAAGCTGACAGCGTTGTAAGCTAAAGATGTATTTAACGCACAGGTCA
GTGGAGCATCTCAGATTAGCATCACAACATACTGTTAAGTGTGGGTGGTT
TCTCCTAGCAACCGCAGAGCTGGGTGGTATCTGAGGCTCCCTGTCACTGC
CCACTATCATAAGAGAGGATTGTGCCACTCACTATCCCTAGAGAAGAACT
AAATTTAGGAACCAAAACTGTGGTATCTCTTCCACACCTTTTTTAATTCG
TGAGCCCTGCACTGTGGGTGTTCCGTAATATGTCAGAAATTATTTGCGCA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_d17.g1 MSMg01no052_d17.g1 CHROMAT_FILE:
MSMg01no052_d17.g1 PHD_FILE: MSMg01no052_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:47 2005
         (444 letters)



>mm_chr8_16011619_16012462
          Length = 844

 Score =  793 bits (410), Expect = 0.0
 Identities = 437/446 (97%), Gaps = 3/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctaag-acatgtcaggtggctgagccacctgcccctatagctccaggggatccaaca 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 attctaagcacatgtcaggtggctgagccacctgcccctatagctccaggggatccaaca 552

                                                                       
Query: 60  cttctagcctccatgagcacccacaaacatggtgcatactatagaggcacaggtgtattc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cttctagcctccatgagcacccacaaacatggtgcatactatagaggcacaggtgtattc 492

                                                                       
Query: 120 attattaaaaataaattgaaatttaaaaaaaaggaaaagaaacagaaagagaagcagact 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 attattaaaaataaattgaaatttaaaaaaaaggaaaagaaacagaaagagaagcagact 432

                                                                       
Query: 180 ggggagcagctgtatgc-cttgaaagtcacccatattgctgactttctcaagccatttaa 238
           ||||||||||||||| | ||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 431 ggggagcagctgtat-cacttgaaagtcaccgatattactgactttctctagccatttaa 373

                                                                       
Query: 239 cccttccctgtagtttccacagcttcccctaataggctatcagctagggactgtgctaaa 298
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cccttccctgtagtttccacaacttcccctaataggctatcagctagggactgtgctaaa 313

                                                                       
Query: 299 gtacatgagcctgtgggagtttcatattgaaaccatgacaagctgacagcgttgtaagct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtacatgagcctgtgggagtttcatattgaaaccatgacaagctgacagcgttgtaagct 253

                                                                       
Query: 359 aaagatgtatttaacgcacaggtcagtggagcatctcagattagcatcacaacatactgt 418
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 252 aaagatgtatttaacgcacaggtcagtggagcatttcagattagcatcacaacatactgt 193

                                     
Query: 419 taagtgtgggtggtttctcctagcaa 444
           | ||||||||||||||||||||||||
Sbjct: 192 tgagtgtgggtggtttctcctagcaa 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)