CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATAACAAGGCTTTATTCATTTTTATGTATCATTTTTTGAGACCTGT
GTTCTTGTAGCACAGGCTAGCCACAAATTCACTATGTAGCTAAAGATAAC
ACTGAACTCACAGCCTGCCTCTACCTCCCAAGTGCTGGGAAATCAGGCAT
GCACCACCATTCCCAGTAACAACAAACTTTTCATATAGAAATATTTTCTG
TTTGCTTGGCATTTACTAAAGATGTAATTTTTCTATACACCCTTATATTT
TTTTCTATTTTCTTGAAAATATTATGATGTACTCTAAAATACACATTCCA
TACATATGCATGCATCTCTGTCATGTAGGATTAATGTAATGCAGAAATGT
ATTAATGGAATATGTCCCTTCTGGACCATTCCACAGCTCTAATTTTTATA
CACTTACAGATTTGTGCACTTTACCTCTGGTGTCTTCCCACGACAATGAG
ATAAGATTTTTTTGTTTAGGTTTTGGATTGACTTGGCTTTTACATTTATC
CCCCATAGGCTAAGTCCCACACTTTGTCTTTAATGATGTGTCACCTTACT
TCCTCCCTATGTGGTCAGNTCAACATCACTTTTCTCCATTTGGTTTCTCC
TACTATTGTCAGATTATCACTCTGATAGCCTGCCCTAAATGTTGATTTTT
CACTTGCTTAAA

CGATGCTGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGTCTCTGACTGCATATGTAGCAGAGA
ATGGCCTAGTCAGTCATCAATGGGAGGAGAGGCCCTTGGTCTTGTGAAGG
TTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAGGAGGGAGTGGGT
GGGTTGGGGAGAAGGGGGAGTTTTTTCTTTCTCTTCTCTTTTTCTTCTTT
CTCTCCTCTTCCTTCTTCTTTCTTTTCTTTCTTTCTTTCCCTTCTCTTTT
TTTTTTTGCCCTCTTCTTTTGTTTTTTTTTTTTCTCTTTTCTTTCCTCTT
CTTCCTTTTTTCTTTTTTTTGTTTTCTTCCTTTCCTTTCTCTCTTCTTTT
TTTTTTCTTTCCTCTCCCTCTTTTTCTCTTCTCTTCCTCCTTCTTTCTCC
CTTTCCTCTTCTTTTTTTCTCTTTCCTTTCTCTTCTTCTCTTCTCTTTCT
TCTCTTTTTTTTTTTCTCTTCCTTTTCTTTTCTTCATTCCTCTTTTTTTT
TCTTATTTCTCTTCTTCTCTTCCCCTTTTTTTCCTTTCCCTTCTCTCTCT
CCTTTTTCTCCTTCTCTTTTCTTTCTGCTCTCTTTCTGTCTTATCTTTCT
CTTTCTTCTTCTTTTTCTTTTCCGCTTCCTTTCTTCTTCCTTTTTCCTCT
TCTTTTTCTCTTCTTTTCTCACCTCCCTCCCTTCTCTTGTCCTTCTTTCC
TCGTTCCTCTTTTCTTTGTCTTTCTTTTTTTG

Query= MSMg01no052_i03.b1 MSMg01no052_i03.b1 CHROMAT_FILE:
MSMg01no052_i03.b1 PHD_FILE: MSMg01no052_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:09 2005
         (669 letters)



>mm_chr8_38088548_38089616
          Length = 1069

 Score = 1272 bits (658), Expect = 0.0
 Identities = 663/665 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcaataacaaggctttattcatttttatgtatcattttttgagacctgtgttcttg 64
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 gaattcaataacaaggatttattcatttttatgtatcattttttgagacctgtgttcttg 980

                                                                        
Query: 65   tagcacaggctagccacaaattcactatgtagctaaagataacactgaactcacagcctg 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  tagcacaggctagccacaaattcactatgtagctaaagataacactgaactcacagcctg 920

                                                                        
Query: 125  cctctacctcccaagtgctgggaaatcaggcatgcaccaccattcccagtaacaacaaac 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  cctctacctcccaagtgctgggaaatcaggcatgcaccaccattcccagtaacaacaaac 860

                                                                        
Query: 185  ttttcatatagaaatattttctgtttgcttggcatttactaaagatgtaatttttctata 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  ttttcatatagaaatattttctgtttgcttggcatttactaaagatgtaatttttctata 800

                                                                        
Query: 245  cacccttatatttttttctattttcttgaaaatattatgatgtactctaaaatacacatt 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  cacccttatatttttttctattttcttgaaaatattatgatgtactctaaaatacacatt 740

                                                                        
Query: 305  ccatacatatgcatgcatctctgtcatgtaggattaatgtaatgcagaaatgtattaatg 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739  ccatacatatgcatgcatctctgtcatgtaggattaatgtaatgcagaaatgtattaatg 680

                                                                        
Query: 365  gaatatgtcccttctggaccattccacagctctaatttttatacacttacagatttgtgc 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  gaatatgtcccttctggaccattccacagctctaatttttatacacttacagatttgtgc 620

                                                                        
Query: 425  actttacctctggtgtcttcccacgacaatgagataagatttttttgtttaggttttgga 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619  actttacctctggtgtcttcccacgacaatgagataagatttttttgtttaggttttgga 560

                                                                        
Query: 485  ttgacttggcttttacatttatcccccataggctaagtcccacactttgtctttaatgat 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559  ttgacttggcttttacatttatcccccataggctaagtcccacactttgtctttaatgat 500

                                                                        
Query: 545  gtgtcaccttacttcctccctatgtggtcagntcaacatcacttttctccatttggtttc 604
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 499  gtgtcaccttacttcctccctatgtggtcagttcaacatcacttttctccatttggtttc 440

                                                                        
Query: 605  tcctactattgtcagattatcactctgatagcctgccctaaatgttgatttttcacttgc 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439  tcctactattgtcagattatcactctgatagcctgccctaaatgttgatttttcacttgc 380

                 
Query: 665  ttaaa 669
            |||||
Sbjct: 379  ttaaa 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)