BAC Information

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BAC

Clone NameMSMg01-052M10
Chromosome8 (Build37)
Map Location 40,689,228 - 40,875,385
singlet/doubletdoublet
Overlap geneMsr1, EG621431, LOC100039072
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304
Downstream geneLOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052M10.T7 (MSMg01no052_m10.b1)MSMg01-052M10.TJ (MSMg01no052_m10.g1)
ACCAG281177AG281178
length713710
length of high quality
(start - end)		673 (41 - 713)642 (69 - 710)
definitionCHROMAT_FILE: MSMg01no052_m10.b1 PHD_FILE: MSMg01no052_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:29 2005CHROMAT_FILE: MSMg01no052_m10.g1 PHD_FILE: MSMg01no052_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,874,717 - 40,875,385)(40,689,228 - 40,689,869)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATACTTATATCAAAGAATTCAATATTTTACTTTTAAAATCCAATTTAAG
GAACTATGGAAGTGGCTCAGTGATTAAAAGCATTGCTGATCTTGCAAAAG
GCTTGGGTTTGGTCCCCAGCACTGGCACAATTGCACACACCAATATCTAA
CTCCAGTTCTGTTGTGTCTGACATCCTCACCATCTGACTTCTGAAGCCAC
CTGGCACACACATAGTCCATGTACACAGTAGGCCAATAGTCATACATGTA
AAATAAGACATATACATTTAAAAATAAAACCAAAATTTAACATTATTAAA
AGATATGAATTGACACTTTGTATGTGAAAAGATTGAGATAATGTAAAATT
GAGAATTTTAAAATTTTAATTTGATATTTCTTTATCTTTATCAGTCTGGT
AGAAAAGAAAAAAATGTCTGTGCACATAGCTTATTTCAACAATGACTTCA
TTATTAAATGTTCTAGCCAGTTTTCTTATGGGACCAGAGTTGGTCTTTGC
CTTTGGATAATATTCTTTAATAATAAGAAGAAATGTAGCACGTTTTTTTA
AATTAATTTTAAACTTTTTGTGCCCTATATAGTTTAACCTAATAATATTT
AGCAAATAAAATTTGTATAATAATATAAGAAAGAATTTGCCTGCCAAAGA
TTGTTTAAAAAGT

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAGAATTCGTATGCCAGCACAGCTGGGATTG
GGGTCATTCTGTATGAAGCCAAAATTTTCCACAGCAATGCATCTGGCACA
AGAAAAGAGTCACCCACACTCCACAGCACAGGCCAATTAAGCCACAGGTA
CAAATCCAGGTTTCTCTAGATGTTTTCACAGAATAACTAGTCCATTCATA
CTACAGACTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAG
ACACATTTCATCAGACCTTGGAGGCACAAAGGCAGAGACAAAACCTTGTA
CCAGTAACAATGCAAATTTGTTGCTGTCCTTCTTAGAACATGCTCGACAG
AAATGGGCTCAGGTTCTGTCCTGCATAGCCCAAGCTTGTTTTATTAGTTT
GACATTTGGCCTCTGGTTTAGCTGCTTCTCTTCCTTACACAATCTTCTTC
TTTGCTGAGACAAACTCACTGACTTATGTTCTGGGCACACGTGCATTGTT
CCATATAACATAGAAATCTTGTCTTATTTAAAAATTTTTTAAATTTAAAT
TAAATACATATGGCTCTTGGCATTTTTATATTCTTTCAGTCCTGATATGA
TTAGAGATTTACCAGGTCTGCATAAAATTTACAATGAACAGCTGTTCTGT
TAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_m10.b1 MSMg01no052_m10.b1 CHROMAT_FILE:
MSMg01no052_m10.b1 PHD_FILE: MSMg01no052_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:29 2005
         (673 letters)



>mm_chr8_40874370_40875442
          Length = 1073

 Score = 1286 bits (665), Expect = 0.0
 Identities = 668/669 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctatacttatatcaaagaattcaatattttacttttaaaatccaatttaaggaac 64
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 gaattctatacttatattaaagaattcaatattttacttttaaaatccaatttaaggaac 957

                                                                        
Query: 65   tatggaagtggctcagtgattaaaagcattgctgatcttgcaaaaggcttgggtttggtc 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  tatggaagtggctcagtgattaaaagcattgctgatcttgcaaaaggcttgggtttggtc 897

                                                                        
Query: 125  cccagcactggcacaattgcacacaccaatatctaactccagttctgttgtgtctgacat 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  cccagcactggcacaattgcacacaccaatatctaactccagttctgttgtgtctgacat 837

                                                                        
Query: 185  cctcaccatctgacttctgaagccacctggcacacacatagtccatgtacacagtaggcc 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  cctcaccatctgacttctgaagccacctggcacacacatagtccatgtacacagtaggcc 777

                                                                        
Query: 245  aatagtcatacatgtaaaataagacatatacatttaaaaataaaaccaaaatttaacatt 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  aatagtcatacatgtaaaataagacatatacatttaaaaataaaaccaaaatttaacatt 717

                                                                        
Query: 305  attaaaagatatgaattgacactttgtatgtgaaaagattgagataatgtaaaattgaga 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  attaaaagatatgaattgacactttgtatgtgaaaagattgagataatgtaaaattgaga 657

                                                                        
Query: 365  attttaaaattttaatttgatatttctttatctttatcagtctggtagaaaagaaaaaaa 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  attttaaaattttaatttgatatttctttatctttatcagtctggtagaaaagaaaaaaa 597

                                                                        
Query: 425  tgtctgtgcacatagcttatttcaacaatgacttcattattaaatgttctagccagtttt 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  tgtctgtgcacatagcttatttcaacaatgacttcattattaaatgttctagccagtttt 537

                                                                        
Query: 485  cttatgggaccagagttggtctttgcctttggataatattctttaataataagaagaaat 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  cttatgggaccagagttggtctttgcctttggataatattctttaataataagaagaaat 477

                                                                        
Query: 545  gtagcacgtttttttaaattaattttaaactttttgtgccctatatagtttaacctaata 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476  gtagcacgtttttttaaattaattttaaactttttgtgccctatatagtttaacctaata 417

                                                                        
Query: 605  atatttagcaaataaaatttgtataataatataagaaagaatttgcctgccaaagattgt 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416  atatttagcaaataaaatttgtataataatataagaaagaatttgcctgccaaagattgt 357

                     
Query: 665  ttaaaaagt 673
            |||||||||
Sbjct: 356  ttaaaaagt 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no052_m10.g1 MSMg01no052_m10.g1 CHROMAT_FILE:
MSMg01no052_m10.g1 PHD_FILE: MSMg01no052_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:29 2005
         (642 letters)



>mm_chr8_40689028_40690069
          Length = 1042

 Score = 1241 bits (642), Expect = 0.0
 Identities = 642/642 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaattcgtatgccagcacagctgggattggggtcattctgtatgaagccaaaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaattcgtatgccagcacagctgggattggggtcattctgtatgaagccaaaatttt 260

                                                                       
Query: 61  ccacagcaatgcatctggcacaagaaaagagtcacccacactccacagcacaggccaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacagcaatgcatctggcacaagaaaagagtcacccacactccacagcacaggccaatt 320

                                                                       
Query: 121 aagccacaggtacaaatccaggtttctctagatgttttcacagaataactagtccattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccacaggtacaaatccaggtttctctagatgttttcacagaataactagtccattca 380

                                                                       
Query: 181 tactacagactcccaaaatcattggctaattccatctttcttttcctcggagacacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactacagactcccaaaatcattggctaattccatctttcttttcctcggagacacattt 440

                                                                       
Query: 241 catcagaccttggaggcacaaaggcagagacaaaaccttgtaccagtaacaatgcaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcagaccttggaggcacaaaggcagagacaaaaccttgtaccagtaacaatgcaaatt 500

                                                                       
Query: 301 tgttgctgtccttcttagaacatgctcgacagaaatgggctcaggttctgtcctgcatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttgctgtccttcttagaacatgctcgacagaaatgggctcaggttctgtcctgcatag 560

                                                                       
Query: 361 cccaagcttgttttattagtttgacatttggcctctggtttagctgcttctcttccttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccaagcttgttttattagtttgacatttggcctctggtttagctgcttctcttccttac 620

                                                                       
Query: 421 acaatcttcttctttgctgagacaaactcactgacttatgttctgggcacacgtgcattg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaatcttcttctttgctgagacaaactcactgacttatgttctgggcacacgtgcattg 680

                                                                       
Query: 481 ttccatataacatagaaatcttgtcttatttaaaaattttttaaatttaaattaaataca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccatataacatagaaatcttgtcttatttaaaaattttttaaatttaaattaaataca 740

                                                                       
Query: 541 tatggctcttggcatttttatattctttcagtcctgatatgattagagatttaccaggtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatggctcttggcatttttatattctttcagtcctgatatgattagagatttaccaggtc 800

                                                     
Query: 601 tgcataaaatttacaatgaacagctgttctgttaaaaaaaaa 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgcataaaatttacaatgaacagctgttctgttaaaaaaaaa 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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