BAC Information

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BAC

Clone NameMSMg01-053E22
Chromosome3 (Build37)8 (Build37)
Map Location 40,890,847 - 40,891,13431,393,236 - 31,393,536
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053E22.T7 (MSMg01no053_e22.b1)MSMg01-053E22.TJ (MSMg01no053_e22.g1)
ACCAG281557AG281558
length709710
length of high quality
(start - end)
289 (75 - 363)301 (74 - 374)
definitionCHROMAT_FILE: MSMg01no053_e22.b1 PHD_FILE: MSMg01no053_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:11 2005CHROMAT_FILE: MSMg01no053_e22.g1 PHD_FILE: MSMg01no053_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:11 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,890,847 - 40,891,134)(31,393,236 - 31,393,536)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTTTCCTCTATTTCAGGAGAAAATTACTTTATTGTTGAAGACAGGTC
CTGATATACAGAAAAGGAAAATTGACCCTCTATTCCAGGCTTGCCAGTGA
ATTTCCAGATGTGTGAGCTTGGGACTTATACACCCCACCATCCTCCTCTC
CTTTCCTTTCTCTTCCCTTCTGGGAGGCAGATGTGTGTATTTCTTTTTCA
GTTACCTCATACCTCAAGTTTGATAGGGGATTGCTCCTGCTGGGGAACAC
CCCTGCAAACTTACTGGGATCTCTGTGTTGAGGAAAGCTTCTGAACTGGG
AGCTAAGTTCACTTCCATAGACCAACACCACCCAATGTTTGAACTTTAAT
TCAGTGGTCAGATAGCTCACTGTTGGATGTGATAATTTTGGACTTTAACA
CAAGTTGGTTCTGATTACTTTGAGCTGTAATTTAGAAAAAAGTACTTTGA
TCTCTAATTTCTCTTGGTAAACCTCATATTGAGAGAGCCACTAATGTATA
TTGGGTATCAATTTTCGACTGCTATCTACATTTTTGGAGTCCTTTTTTTT
CTATAATTGATTATTATGTTACTAGCTAGCACGACATCCGCTTTGAGATG
GCTGTTACCTCAGGTTCTTGTTTTTTTTCCCCCCCTTTTGCCTATTGTTT
TTGTTTCGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTATCAGGGTCAAAGTCACTGAAGGCC
ACCCCTAGGAGGGTAGTGAACAAGGTGATAATGTTGAAGATAGATGGGTA
TTTGAAGAAGTCAGTGACAGGAGAGTATCAGACACCTGCTGGGGAAAGTC
ACAGTGAAGGTGGCAGATCATGAGACGTAACATAGGCTGCATCAAGCAGG
TCCACGGGGTCGGGTGAGGTGGTGTTTGTCTAAGGGCTTGAGAACTGTTG
TGTTACATGGAGAGACAGGATTTACCCTTGGTCATGTACCTCTGCTTTTG
TTTTCTTTATAGAAAATATGATTACCATAGGCCAAGGTAGATGTTTATTC
TTTTTAACAATTTTGGAAGTATCAGCCATTATCTCTTTAAATGTTGCTAC
TGTTGACTTGTTTTTCCTCGAAGTTGCCTTAGATACACCACATACCCATA
TGTTAGGACATTTGATCATATCTTAACCCCTTTTAGTGCTTTACTTTAGT
GTCCCTCTCTCTCCCTCTTCTTTTTTTCCTCCCCCTTTCCCTCTCTCCTC
TTTCTCTCTTCTTTCTGTCTGCTCCCTTATCTTCTTCCCTTCTACCTTCT
CTTTCCTTTTCATCCTTTAGTCGTGCTTTTCGCCTTCACATTTTCTTTTT
CTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_e22.b1 MSMg01no053_e22.b1 CHROMAT_FILE:
MSMg01no053_e22.b1 PHD_FILE: MSMg01no053_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:11 2005
         (289 letters)



>mm_chr3_40890646_40891334
          Length = 689

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   attactttattgttgaagacaggtcctgatatacagaaaaggaaaattgaccctctattc 61
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 attactttattgttgaagacaggtcctgatatacagaaaaggaaaattgatcctctattc 261

                                                                       
Query: 62  caggcttgccagtgaatttccagatgtgtgagcttgggacttatacaccccaccatcctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caggcttgccagtgaatttccagatgtgtgagcttgggacttatacaccccaccatcctc 321

                                                                       
Query: 122 ctctcctttcctttctcttcccttctgggaggcagatgtgtgtatttctttttcagttac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctctcctttcctttctcttcccttctgggaggcagatgtgtgtatttctttttcagttac 381

                                                                       
Query: 182 ctcatacctcaagtttgataggggattgctcctgctggggaacacccctgcaaacttact 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcatacctcaagtttgataggggattgctcctgctggggaacacccctgcaaacttact 441

                                                           
Query: 242 gggatctctgtgttgaggaaagcttctgaactgggagctaagttcact 289
           |||||| |||||  ||||||||||||||||||||||||||||||||||
Sbjct: 442 gggatccctgtggggaggaaagcttctgaactgggagctaagttcact 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no053_e22.g1 MSMg01no053_e22.g1 CHROMAT_FILE:
MSMg01no053_e22.g1 PHD_FILE: MSMg01no053_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:11 2005
         (301 letters)



>mm_chr8_31393036_31393736
          Length = 701

 Score =  505 bits (261), Expect = e-147
 Identities = 291/301 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatcagggtcaaagtcactgaaggccacccctaggagggtagtgaacaaggtgataatg 60
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 501 ttatcagggtcaaagtcactgaaggctacccctaggagggtaatgaacaaggtgataatg 442

                                                                       
Query: 61  ttgaagatagatgggtatttgaagaagtcagtgacaggagagtatcagacacctgctggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaagatagatgggtatttgaagaagtcagtgacaggagagtatcagacacctgctggg 382

                                                                       
Query: 121 gaaagtcacagtgaaggtggcagatcatgagacgtaacataggctgcatcaagcaggtcc 180
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 381 gaaagtcacagtgaaggtggcagatcatgacaagtaacataggctgcatcaagcaggtcc 322

                                                                       
Query: 181 acggggtcgggtgaggtggtgtttgtctaagggcttgagaactgttgtgttacatggaga 240
           | ||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||
Sbjct: 321 atggggttgggtgaggtggtgtttgtctaagggcttgagaactattgtgcgacatggaga 262

                                                                       
Query: 241 gacaggatttacccttggtcatgtacctctgcttttgttttctttatagaaaatatgatt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaggatttatccttggtcatgtacctctgcttttgttttctttatagaaaatatgatt 202

            
Query: 301 a 301
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)