MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-053N06
Chromosome	8 (Build37)
Map Location	85,810,430 - 85,810,571
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Il15, EG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9
Downstream gene	Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Link	Open Mouse BAC browser

Click to get alignment info.

name	Il15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16168 MGI:103014
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666564 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666564 MGI:3644250
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 23 Proteins pseudo : _no_value

name	LOC675800 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675800
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	EG666289 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666289 MGI:3647995
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Zfp330 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30932 MGI:1353574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf150 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330812 MGI:2443860
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039688 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039688
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Tbc1d9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71310 MGI:1918560
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ucp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22227 MGI:98894
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elmod2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244548 MGI:2445165
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933434I20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67555 MGI:1914805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clgn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12745 MGI:107472
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Scoc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56367 MGI:1927654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC546077 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546077
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 177 ESTs, 6 Proteins pseudo : _no_value

name	LOC675854 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Olfr370 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258267 MGI:3030204
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufb7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66916 MGI:1914166
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpsn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106529 MGI:1915408
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dnajb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81489 MGI:1931874
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gipc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67903 MGI:1926252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptger1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19216 MGI:97793
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pkn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320795 MGI:108022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddx39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68278 MGI:1915528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd97 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26364 MGI:1347095
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG384857 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384857 MGI:3646765
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Lphn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330814 MGI:1929461
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asf1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66929 MGI:1914179
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkaca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18747 MGI:97592
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Samd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666704 MGI:2142433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700067K01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73453 MGI:1920703
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2210011C24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70134 MGI:1917384
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs

name	4432412L15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74337 MGI:1921587
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il27ra (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50931 MGI:1355318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rln3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212108 MGI:2158015
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C330011M18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:442802 MGI:3045248
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Rfx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19724 MGI:105982
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC057552 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212123 MGI:2684420
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039920 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039920
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	Podnl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244550 MGI:2685352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cc2d1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212139 MGI:2384831
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930432K21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74666 MGI:1921916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nanos3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244551 MGI:2675387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zswim4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212168 MGI:2443726
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D8Ertd738e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101966 MGI:1289231
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410018C20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67873 MGI:1915123
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc130 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67736 MGI:1914986
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680406 GeneID:16168 MGI:103014
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 15 transcript_id : NM_008357.1

name	EG666289 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149258959 GeneID:666289 MGI:3647995
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : predicted gene, EG666289 transcript_id : XM_993407.2

name	Zfp330 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704207 GeneID:30932 MGI:1353574
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 330 transcript_id : NM_145600.1

name	Rnf150 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90991707 GeneID:330812 MGI:2443860
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 150 transcript_id : NM_177378.3

name	Tbc1d9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381882 GeneID:71310 MGI:1918560
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TBC1 domain family, member 9 transcript_id : NM_027758.2

name	Ucp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981931 GeneID:22227 MGI:98894
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uncoupling protein 1 (mitochondrial, proton carrier) transcript_id : NM_009463.2

name	Elmod2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367620 GeneID:244548 MGI:2445165
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELMO domain containing 2 transcript_id : NM_178736.4

name	4933434I20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119964703 GeneID:67555 MGI:1914805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933434I20 gene transcript_id : NM_026233.2

name	Clgn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86262137 GeneID:12745 MGI:107472
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmegin transcript_id : NM_009904.2

name	Scoc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114687673 GeneID:56367 MGI:1927654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : short coiled-coil protein transcript_id : NM_001039137.2

name	Scoc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114687764 GeneID:56367 MGI:1927654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : short coiled-coil protein transcript_id : NM_019708.3

name	Olfr370 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22129744 GeneID:258267 MGI:3030204
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 370 transcript_id : NM_146270.1

name	Ndufb7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354042 GeneID:66916 MGI:1914166
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7 transcript_id : NM_025843.2

name	Gpsn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802387 GeneID:106529 MGI:1915408
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycoprotein, synaptic 2 transcript_id : NM_134118.2

name	Dnajb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9055241 GeneID:81489 MGI:1931874
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily B, member 1 transcript_id : NM_018808.1

name	Gipc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475640 GeneID:67903 MGI:1926252
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GIPC PDZ domain containing family, member 1 transcript_id : NM_018771.3

name	Ptger1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892046 GeneID:19216 MGI:97793
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prostaglandin E receptor 1 (subtype EP1) transcript_id : NM_013641.2

name	Pkn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32813438 GeneID:320795 MGI:108022
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase N1 transcript_id : NM_177262.3

name	Ddx39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38372906 GeneID:68278 MGI:1915528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 transcript_id : NM_197982.2

name	Cd97 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753359 GeneID:26364 MGI:1347095
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD97 antigen transcript_id : NM_011925.1

name	Lphn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56118950 GeneID:330814 MGI:1929461
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : latrophilin 1 transcript_id : NM_181039.1

name	Asf1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130257 GeneID:66929 MGI:1914179
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ASF1 anti-silencing function 1 homolog B (S. cerevisiae) transcript_id : NM_024184.2

name	Prkaca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475738 GeneID:18747 MGI:97592
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase, cAMP dependent, catalytic, alpha transcript_id : NM_008854.3

name	Samd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487220 GeneID:666704 MGI:2142433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sterile alpha motif domain containing 1 transcript_id : NM_001081415.1

name	1700067K01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34147068 GeneID:73453 MGI:1920703
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700067K01 gene transcript_id : NM_183097.1

name	2210011C24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383703 GeneID:70134 MGI:1917384
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs product : RIKEN cDNA 2210011C24 gene transcript_id : XM_985599.1

name	4432412L15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430706 GeneID:74337 MGI:1921587
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4432412L15 gene transcript_id : NM_028877.1

name	Il27ra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980646 GeneID:50931 MGI:1355318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 27 receptor, alpha transcript_id : NM_016671.2

name	Rln3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27502354 GeneID:212108 MGI:2158015
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : relaxin 3 transcript_id : NM_173184.1

name	Rfx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361730 GeneID:19724 MGI:105982
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulatory factor X, 1 (influences HLA class II expression) transcript_id : NM_009055.3

name	BC057552 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360075 GeneID:212123 MGI:2684420
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC057552 transcript_id : NM_172502.3

name	LOC100039920 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258961 GeneID:100039920
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : similar to Ubtf protein transcript_id : XM_001473784.1

name	Podnl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61656183 GeneID:244550 MGI:2685352
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : podocan-like 1 transcript_id : NM_001013384.1

name	Cc2d1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122408 GeneID:212139 MGI:2384831
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil and C2 domain containing 1A transcript_id : NM_145970.1

name	4930432K21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037384 GeneID:74666 MGI:1921916
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930432K21 gene transcript_id : NM_029045.1

name	Nanos3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130762 GeneID:244551 MGI:2675387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nanos homolog 3 (Drosophila) transcript_id : NM_194059.2

name	Zswim4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130013 GeneID:212168 MGI:2443726
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, SWIM domain containing 4 transcript_id : NM_172503.3

name	D8Ertd738e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56090601 GeneID:101966 MGI:1289231
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 8, ERATO Doi 738, expressed transcript_id : NM_001007571.1

name	2410018C20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357511 GeneID:67873 MGI:1915123
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410018C20 gene transcript_id : NM_026423.3

name	Ccdc130 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142355090 GeneID:67736 MGI:1914986
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 130 transcript_id : NM_026350.2

name	Il15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680407 GeneID:16168 MGI:103014
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA]; GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IMP]; GO:0005126 - hematopoietin/interferon-class (D200-domain) cytokine receptor binding [Evidence IEA] GO_process : GO:0045062 - extrathymic T cell selection [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0048535 - lymph node development [Evidence IMP]; GO:0001866 - NK T cell proliferation [Evidence IMP]; GO:0050778 - positive regulation of immune response [Evidence IMP]; GO:0042102 - positive regulation of T cell proliferation [Evidence IMP]; GO:0050691 - regulation of antiviral response by host [Evidence IMP]; GO:0045580 - regulation of T cell differentiation [Evidence IMP] codon_start : 1 product : interleukin 15 protein_id : NP_032383.1

name	EG666289 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94383684 GeneID:666289 MGI:3647995
definition	codon_start : 1 product : hypothetical protein protein_id : XP_998501.1

name	Zfp330 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704208 CCDS:CCDS22447.1 GeneID:30932 MGI:1353574
definition	GO_component : GO:0000775 - chromosome, pericentric region [Evidence ISS]; GO:0030496 - midbody [Evidence ISS]; GO:0005730 - nucleolus [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA] [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : nucleolar autoantigen; NOA 36 product : nucleolar autoantigen 36 protein_id : NP_663575.1

name	Rnf150 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:90991708 GeneID:330812 MGI:2443860
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : ring finger protein 150 protein_id : NP_796352.2

name	Tbc1d9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794404 CCDS:CCDS22448.1 GeneID:71310 MGI:1918560
definition	codon_start : 1 product : TBC1 domain family, member 9 protein_id : NP_082034.1

name	Ucp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678497 CCDS:CCDS22449.1 GeneID:22227 MGI:98894
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005740 - mitochondrial envelope [Evidence IDA]; GO:0005743 - mitochondrial inner membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0017077 - oxidative phosphorylation uncoupler activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006839 - mitochondrial transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : uncoupling protein, mitochondrial; uncoupling protein 1, mitochondrial product : uncoupling protein 1 (mitochondrial, proton carrier) protein_id : NP_033489.1

name	Elmod2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542057 CCDS:CCDS22450.1 GeneID:244548 MGI:2445165
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006909 - phagocytosis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ELMO domain containing 2 protein_id : NP_848851.2

name	4933434I20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119964704 CCDS:CCDS22451.1 GeneID:67555 MGI:1914805
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA] codon_start : 1 product : hypothetical protein LOC67555 protein_id : NP_080509.2

name	Clgn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86262138 CCDS:CCDS22452.1 GeneID:12745 MGI:107472
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 product : calmegin protein_id : NP_034034.2

name	Scoc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85362711 CCDS:CCDS22453.1 GeneID:56367 MGI:1927654
definition	codon_start : 1 note : isoform a is encoded by transcript variant 1; short coiled coil protein SCOCO product : short coiled-coil protein isoform a protein_id : NP_001034226.1

name	Scoc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790207 GeneID:56367 MGI:1927654
definition	codon_start : 1 note : isoform b is encoded by transcript variant 2; short coiled coil protein SCOCO product : short coiled-coil protein isoform b protein_id : NP_062682.1

name	Olfr370 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22129745 CCDS:CCDS22454.1 GeneID:258267 MGI:3030204
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : GA_x6K02T2NUPS-11609807-11610751; olfactory receptor MOR267-16 product : olfactory receptor 370 protein_id : NP_666382.1

name	Ndufb7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385322 CCDS:CCDS22455.1 GeneID:66916 MGI:1914166
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA] [Evidence IDA] GO_function : GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0003954 - NADH dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7 protein_id : NP_080119.1

name	Gpsn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19923070 GeneID:106529 MGI:1915408
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : glycoprotein, synaptic 2 protein_id : NP_598879.1

name	Dnajb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055242 CCDS:CCDS22456.1 GeneID:81489 MGI:1931874
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0051085 - chaperone cofactor-dependent protein folding [Evidence IGI]; GO:0006457 - protein folding [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 product : DnaJ (Hsp40) homolog, subfamily B, member 1 protein_id : NP_061278.1

name	Gipc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055336 CCDS:CCDS22457.1 GeneID:67903 MGI:1926252
definition	codon_start : 1 note : synectin; Tax interacting protein, clone 2; semaF cytoplasmic domain associated protein; RGS-GAIP interacting protein GIPC; neurophilin1-IP product : regulator of G-protein signaling 19 interacting protein 1 protein_id : NP_061241.1

name	Ptger1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7363447 CCDS:CCDS22458.1 GeneID:19216 MGI:97793
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004957 - prostaglandin E receptor activity [Evidence IEA]; GO:0004955 - prostaglandin receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : prostaglandin E receptor 1 (subtype EP1) protein_id : NP_038669.1

name	Pkn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32813439 CCDS:CCDS22459.1 GeneID:320795 MGI:108022
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IMP]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006972 - hyperosmotic response [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : serine/threonine kinase 3; protein kinase C-like 1 product : protein kinase N1 protein_id : NP_796236.2

name	Ddx39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38372907 CCDS:CCDS22460.1 GeneID:68278 MGI:1915528
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 note : UAP56-related helicase, 49 kDa; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 39 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 protein_id : NP_932099.2

name	Cd97 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753360 CCDS:CCDS22461.1 GeneID:26364 MGI:1347095
definition	GO_component : GO:0016021 - integral to membrane [Evidence TAS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence TAS] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : EGF-TM7 receptor product : CD97 antigen protein_id : NP_036055.1

name	Lphn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56118951 GeneID:330814 MGI:1929461
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0016524 - latrotoxin receptor activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007218 - neuropeptide signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : lectomedin-2 product : latrophilin 1 protein_id : NP_851382.1

name	Asf1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313226 CCDS:CCDS22462.1 GeneID:66929 MGI:1914179
definition	GO_component : GO:0000785 - chromatin [Evidence IDA] GO_function : GO:0042393 - histone binding [Evidence IDA] GO_process : GO:0006334 - nucleosome assembly [Evidence IDA] codon_start : 1 product : anti-silencing function 1B protein_id : NP_077146.1

name	Prkaca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7110693 CCDS:CCDS22463.1 GeneID:18747 MGI:97592
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0031594 - neuromuscular junction [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004691 - cAMP-dependent protein kinase activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0001707 - mesoderm formation [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 note : C alpha; cAMP-dependent protein kinase catalytic subunit C alpha 2 product : protein kinase, cAMP dependent, catalytic, alpha protein_id : NP_032880.1

name	Samd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487221 GeneID:666704 MGI:2142433
definition	codon_start : 1 product : sterile alpha motif domain containing 1 protein_id : NP_001074884.1

name	1700067K01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147069 CCDS:CCDS22464.1 GeneID:73453 MGI:1920703
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC73453 protein_id : NP_898920.1

name	2210011C24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94383704 GeneID:70134 MGI:1917384
definition	codon_start : 1 product : hypothetical protein LOC70134 protein_id : XP_990693.1

name	4432412L15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430707 GeneID:74337 MGI:1921587
definition	codon_start : 1 product : paralemmin 3 protein_id : NP_083153.1

name	Il27ra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7710110 CCDS:CCDS22465.1 GeneID:50931 MGI:1355318
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0042607 - exogenous peptide antigen binding [Evidence IDA]; GO:0045509 - interleukin-27 receptor activity [Evidence IDA]; GO:0042287 - MHC protein binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence TAS] codon_start : 1 exception : mismatches in translation note : cytokine receptor family, class 1 (WSXWS), member 1; T cell cytokine receptor product : interleukin 27 receptor, alpha protein_id : NP_057880.1

name	Rln3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27502355 CCDS:CCDS22466.1 GeneID:212108 MGI:2158015
definition	GO_component : GO:0005576 - extracellular region [Evidence TAS] GO_function : GO:0005179 - hormone activity [Evidence IEA] GO_process : GO:0007582 - physiological process [Evidence IEA]; GO:0030819 - positive regulation of cAMP biosynthesis [Evidence ISS] codon_start : 1 note : insulin-like 7 product : relaxin 3 protein_id : NP_775276.1

name	Rfx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543582 CCDS:CCDS22468.1 GeneID:19724 MGI:105982
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : vregulatory factor X, 1 (influences HLA class II expression) product : regulatory factor X, 1 (influences HLA class II expression) protein_id : NP_033081.2

name	BC057552 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249333 GeneID:212123 MGI:2684420
definition	codon_start : 1 product : hypothetical protein LOC212123 protein_id : NP_766090.2

name	LOC100039920 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258962 GeneID:100039920
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473834.1

name	Podnl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61656184 GeneID:244550 MGI:2685352
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : podocan-like 1 protein_id : NP_001013402.1

name	Cc2d1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110835702 GeneID:212139 MGI:2384831
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : five' repressor element under dual repression binding protein 1; 5-HT1A receptor; putative NFkB activating protein product : coiled-coil and C2 domain containing 1A protein_id : NP_666082.2

name	4930432K21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037385 GeneID:74666 MGI:1921916
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC74666 protein_id : NP_083321.1

name	Nanos3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610217 CCDS:CCDS22470.1 GeneID:244551 MGI:2675387
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0048477 - oogenesis [Evidence IEA]; GO:0048157 - oogenesis (sensu Mammalia) [Evidence IMP]; GO:0006417 - regulation of protein biosynthesis [Evidence IEA]; GO:0006445 - regulation of translation [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP] codon_start : 1 product : nanos homolog 3 protein_id : NP_918948.1

name	Zswim4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42476037 CCDS:CCDS22471.1 GeneID:212168 MGI:2443726
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : zinc finger, SWIM domain containing 4 protein_id : NP_766091.2

name	D8Ertd738e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56090602 GeneID:101966 MGI:1289231
definition	codon_start : 1 product : hypothetical protein LOC101966 protein_id : NP_001007572.1

name	2410018C20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541890 CCDS:CCDS22473.1 GeneID:67873 MGI:1915123
definition	GO_process : GO:0044249 - cellular biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC67873 protein_id : NP_080699.2

name	Ccdc130 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312808 GeneID:67736 MGI:1914986
definition	codon_start : 1 product : coiled-coil domain containing 130 protein_id : NP_080626.1

name	EG666564 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666564
definition	number : 1 pseudo : _no_value

name	LOC675800 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675800
definition	number : 1 pseudo : _no_value

name	LOC675800 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675800
definition	number : 2 pseudo : _no_value

name	LOC675800 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675800
definition	number : 3 pseudo : _no_value

name	LOC675800 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675800
definition	number : 4 pseudo : _no_value

name	LOC675800 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675800
definition	number : 5 pseudo : _no_value

name	LOC100039688 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039688
definition	number : 4 pseudo : _no_value

name	LOC100039688 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039688
definition	number : 3 pseudo : _no_value

name	LOC100039688 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039688
definition	number : 2 pseudo : _no_value

name	LOC100039688 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039688
definition	number : 1 pseudo : _no_value

name	LOC675854 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675854
definition	number : 2 pseudo : _no_value

name	LOC675854 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675854
definition	number : 1 pseudo : _no_value

name	EG384857 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384857
definition	number : 1 pseudo : _no_value

name	LOC546077 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258963 GeneID:546077
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 177 ESTs, 6 Proteins product : similar to PES1 protein pseudo : _no_value transcript_id : XR_031582.1

name	C330011M18Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149258960 GeneID:442802 MGI:3045248
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA C330011M18 gene transcript_id : XR_035219.1

clone name	MSMg01-534H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071D23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-276D12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-075C17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-479C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492P13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-524K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111J19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-460O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139M02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-053N06.T7 (MSMg01no053_n06.b1)	MSMg01-053N06.TJ (MSMg01no053_n06.g1)
ACC	AG281934	AG281935
length	730	723
length of high quality (start - end)	142 (113 - 254)	177 (78 - 254)
definition	CHROMAT_FILE: MSMg01no053_n06.b1 PHD_FILE: MSMg01no053_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:51 2005	CHROMAT_FILE: MSMg01no053_n06.g1 PHD_FILE: MSMg01no053_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:51 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ACAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAATCCG CGGAATTCATATTATTTCCTGTTGTCTGATATGTGATACCAACAGCAATA GAATAGGCATGTCCCCAAGCAGCTCTGTTCCTTCTCAGGCCACTGCCCAA TACACCACGGTCATGCTTAATGGTGAACAACCCACCTATAGTGACATTCT CTGCCCTGATCCTTTCCCTCAATTCCATGTGAACTAATCTACCCTCACCC ACTGGATCTGGGGACAGAAATATCTTCTTCTAGATGCTGTTTGTTTGTTT GTTTGCTTGTCTGTTTGATTGATTTCTTCCTCCATTGACCGTAAACCCCA TGACATCCATTTTCCTATATTGACTACGCCTTCCTTCTGACTTTTTCATC ACTTGCTTCCGAATATGTACCCACCCTTATATACACCGCACGCCTCCCTC CGTTCATATAAACTGCCGCGACGCTCTCTCCTGAACTCTTAGATAACTTT TATTCCATCTCCTCCCCTACCTCCATTTCATTTTCTATCTTACCGATTCT CATTCTTTACACACACTACCTGATTTTAATCTTATCCTATTCCTTTTAAT TACCCTTATCCCTTCCCTCGCTTTAATTCCTTTTCTCTTTCCTTCACCGA TATTATATTCCTTCCCTCCTATCCTTTTCTTTATCTCTCCCCTCCCATAT ATTCTCCGTTCTCCTCCTTCCCCTTCCCTA	NTATTCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTGGGA GGAAGAAGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGCCAA AAGAGGCTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGGCAGTCGGTTT CAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGTGTAGTGCGTCAGCAATG CGCAGATAGGTAATGCGCACAGAGGCAATGCGCAGAGAGGCAATGCGCAT AGAGGCAGTGCGCAAAGAGGTATTGCTCTTAGAGGCAGTGCGCAGAGAGG CAGTGCGCATACTTATTCCCTCCCACACAGGAACAAAGGAAAACACAACC GGCATTTCCAGTCTTTGAAGGATCCGAGTGTGACCATGTCCTCGCTCCGG TAGAATACTCCCAGATTATAGAATTCCTCCGAGCCTTTCCCTATCTTCTG TTCCATTTGTTTCCTTCTACTTTGGTGCATTTCGTTACGTTCTCCCGGCA TTTTTTTTTCTCCTGCTGCCCTATCCCCCGCATTTGTTTTTGTCGCCCCC CCTCCCTTTTGTTTTCCCCTTTGTTATCGTAGTACCGTCCTCGTTCCTCA TTTTATCCACTCCCCTCGCCTCTCATCTACACCCCCTTGCTTTGCCTCCC CGATCACCGCCTTTTCGCTCCCT
quality values	Open. Hide. 9 9 9 9 8 10 8 10 11 16 19 20 20 20 14 16 14 12 12 19 21 21 10 10 10 18 13 24 15 19 20 19 19 10 6 6 6 6 6 6 11 8 7 6 6 10 15 16 22 28 28 28 24 30 37 36 33 33 33 33 28 21 17 9 8 8 8 8 8 8 8 10 16 17 21 22 25 19 10 9 9 12 15 20 20 24 30 33 33 33 36 28 28 28 28 28 36 33 23 21 12 10 10 10 10 13 13 24 23 23 11 11 11 17 23 42 42 42 28 32 32 32 25 32 32 36 39 40 40 35 35 35 39 34 31 36 36 33 33 37 37 33 33 33 30 28 18 12 8 7 7 11 11 16 28 28 30 24 15 15 15 17 26 31 35 35 37 37 33 33 20 18 14 15 8 7 7 8 13 19 32 32 30 33 24 25 28 30 27 28 28 28 33 33 39 39 43 43 30 35 35 39 39 43 43 43 42 42 36 35 35 39 39 48 48 48 48 48 47 47 37 37 35 39 32 40 28 28 23 36 28 18 23 11 11 11 23 23 44 46 57 48 47 42 42 35 35 39 44 35 35 24 24 12 12 12 24 32 24 21 15 14 14 15 28 27 32 19 24 14 14 14 27 27 37 30 30 24 32 23 24 12 12 10 12 8 10 10 12 12 28 13 13 19 28 28 17 17 17 26 26 28 19 19 19 19 21 16 16 23 21 21 16 26 18 15 15 24 24 25 25 25 25 15 8 8 8 8 8 15 25 19 15 15 12 17 12 11 10 9 9 9 10 16 16 11 12 11 12 12 15 19 12 12 12 12 12 12 21 19 28 28 32 28 24 18 13 11 11 13 12 14 14 11 10 8 8 6 7 8 8 10 15 13 10 10 10 10 10 10 10 13 18 12 14 14 14 17 13 15 10 10 11 18 18 14 10 10 8 8 8 10 9 9 9 9 9 9 9 8 8 8 6 6 8 8 10 8 8 8 15 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 9 10 12 12 16 11 11 8 8 8 8 8 8 8 8 10 10 10 10 10 10 8 8 6 6 8 8 11 11 9 9 9 12 15 19 22 15 8 8 8 8 8 8 16 16 8 8 8 6 8 8 10 8 8 8 10 10 9 9 10 9 7 8 8 10 10 10 10 10 12 11 10 12 11 10 8 8 8 10 9 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 7 7 8 8 8 8 8 8 8 8 8 8 8 8 10 11 8 8 8 6 6 8 8 8 6 7 8 8 8 8 8 8 8 8 8 8 9 9 10 10 10 10 10 13 10 10 8 8 8 8 8 8 11 11 10 9 8 8 8 8 8 8 10 10 10 10 10 10 8 8 6 6 8 8 12 9 9 9 9 13 10 11 11 11 10 10 6 6 8 8 10 8 8 9 8 8 6 6 8 8 8 8 10 6 6 8 8 8 8 8 11 18 10 10 10 17 17 13 14 12 10 10 9 8 8 8 8 10 8 7 7 6 8 8 6 6 6 6 10 8 8 8 10 8 8 8 8 8 8 8 10 10 10 10 10 10 8 10 8 8 8 8 8 8 8 8 8 8 8 8 10 10 23 15 12 12 10 9 8 10 6 6	Open. Hide. 0 3 8 8 7 7 8 8 13 10 8 8 8 13 9 9 9 11 16 23 35 37 37 39 41 37 37 32 29 31 39 32 30 22 6 6 6 6 6 6 9 9 9 12 17 15 19 13 15 19 21 10 10 10 23 23 33 33 28 28 10 11 7 7 7 8 9 9 9 14 12 12 12 23 27 33 33 48 48 48 57 57 47 57 57 48 48 48 42 37 37 37 37 24 39 37 40 37 33 32 39 39 43 47 43 48 46 47 41 36 36 32 41 42 47 42 48 37 28 28 30 26 19 14 14 18 30 38 57 57 57 36 36 20 21 21 38 38 57 57 43 43 43 44 39 41 44 44 39 39 43 35 35 33 35 35 43 43 38 20 20 20 32 38 43 43 37 37 44 44 44 43 43 43 57 57 54 57 48 57 37 37 23 32 32 42 31 42 42 42 44 47 44 43 43 47 43 47 43 47 43 44 37 36 30 27 27 41 41 48 48 48 48 48 48 47 48 46 43 43 43 43 43 43 48 48 48 54 48 23 19 8 8 8 11 15 23 32 32 32 32 39 39 35 34 34 28 28 23 32 24 21 12 11 8 8 8 8 10 8 8 8 10 12 19 20 21 28 18 23 20 28 20 28 28 28 23 28 28 29 32 24 24 12 13 15 19 19 28 28 23 28 28 31 31 30 19 19 13 13 13 15 15 24 24 26 23 20 20 20 31 25 26 13 13 15 21 18 10 9 9 9 9 8 8 8 8 8 8 8 8 8 10 23 23 20 20 20 20 18 18 12 12 12 11 11 15 21 23 19 10 10 10 8 8 10 13 12 10 15 9 13 8 8 8 8 13 12 10 11 11 11 23 11 11 11 11 11 11 11 11 10 13 13 15 15 20 22 24 20 15 14 14 12 12 12 12 9 9 9 9 9 10 12 12 25 21 23 14 14 13 18 13 13 19 18 12 11 11 9 10 9 15 10 9 12 11 11 11 11 8 8 6 6 8 8 12 18 21 12 11 11 19 18 19 21 23 21 28 14 14 14 15 18 15 16 15 10 10 10 12 11 10 8 12 11 11 8 9 9 9 9 10 13 10 7 7 6 7 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 10 10 10 13 18 18 13 11 12 12 12 11 12 10 10 12 15 12 14 11 11 11 10 10 10 10 10 10 9 8 8 8 8 8 14 11 10 10 10 10 8 8 8 8 8 9 9 9 8 15 9 8 8 8 9 10 10 10 10 11 12 19 15 13 10 8 8 8 8 8 8 13 10 14 17 19 21 15 10 10 10 10 8 8 6 6 8 8 10 10 12 12 8 9 9 9 9 9 16 10 10 10 10 10 10 10 15 15 18 18 10 10 11 14 11 11 10 9 9 8 8 8 8 8 8 8 8 8 8 10 10 10 9 8 8 10 8 8 8 9 9 9 9 9 10 10 13 10 10 9 10 8 8 8 8 8 8 12 9 9 10 9 9 9 9 8 8 10 6 7 10 8 8 8 8 8 8 10 11 10 8 8 8 6 6 10 8 10 10 10 10 12 10 10 8 8 6 6 8 8 8 9 12 12 11 11 12 13 12 12 12 10 13 11 13 12 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no053_n06.b1 MSMg01no053_n06.b1 CHROMAT_FILE:
MSMg01no053_n06.b1 PHD_FILE: MSMg01no053_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:51 2005
         (142 letters)



>mm_chr8_85810230_85810771
          Length = 542

 Score =  252 bits (130), Expect = 1e-71
 Identities = 139/142 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccaagcagctctgttccttctcaggccactgcccaatacaccacggtcatgcttaatg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ccccaagcagctctgttccttctcaggccactgcccaacacaccacggtcatgcttaatg 260

                                                                       
Query: 61  gtgaacaacccacctatagtgacattctctgccctgatcctttccctcaattccatgtga 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgatcaacccacctatagtgacattctctgccctgatcctttccctcaattccatgtga 320

                                 
Query: 121 actaatctaccctcacccactg 142
           || |||||||||||||||||||
Sbjct: 321 acgaatctaccctcacccactg 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information