BAC Information

Click to search

BAC

Clone NameMSMg01-054I21
Chromosome8 (Build37)
Map Location 109,927,035 - 109,927,589
singlet/doubletsinglet
Overlap geneNqo1
Upstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5
Downstream geneNob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054I21.T7 (MSMg01no054_i21.b1)MSMg01-054I21.TJ (MSMg01no054_i21.g1)
ACCAG282460AG282461
length671685
length of high quality
(start - end)		---555 (60 - 614)
definitionCHROMAT_FILE: MSMg01no054_i21.b1 PHD_FILE: MSMg01no054_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:46 2005CHROMAT_FILE: MSMg01no054_i21.g1 PHD_FILE: MSMg01no054_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTGGTTGGGNNNNNNNNNANTGGGGGGGGCCGGGGANNNNAATTATAT
TGGGCGCTAAAGATCACTTCAAAAAGANGGNGGNNTNTNTTTACAAAAAA
GTNGGTTGNNTTTTGTTGTTTTGGTTNTTTTTNTTTTTTTCCCGTNTNTG
TGTTTGTGTTNTNTGTTGTGTGTGTGTGGGGGGGGGGGGGGTGTGGGGTG
GTTTTGGTGGGGGGTGGGTGTGGGGTGTGNTTTGTGGNGTGGTGGGGTGT
TNNGNTTTTTTTTTGGGTGGGGGGGGGGGTGGTTGGGTGTGGGGGTGTGG
GGGGGGTGGGGGGGGGTTTTTTTGTTTTGGGGGGNGGGGGGGGNNGGGGN
NGGGGTTGTTTTTGGCCCCCGGGGGGGGGGGGGGGGGTGGTGTGTGGTGT
TTGTGTTTGTCCCTTTGAGTGAATGGGGGGTGGGTGGGGTGCTGGGCTGG
GAGTGGAGGACGCGGGAAAAGTTGTGAGTGGGTTTGTGGATAAAGTGAGG
TATTGTGTTGTGTGGAAGTGGTTTGAGTGGTGGGGGGTTGGGGTGTGGGG
GGTTTTGTTGTGTGGGAGGGGGGGTGGGAGGGGGTATGGCTATGGGTTGT
GGGTGGGTGTGTGGTTGGGGGAGGTTTTTTTTTTTGGGGTGGGATGAGGG
GGTTATTTGGTTGGGGTGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATTTCACACGAGGACAAATCTCTCTGAACTTTCAGTCTAGA
GTCACAGTGAGTCGGCAAAATTTGAGCCCATCCTTTTCGCTGCCCCACCC
TTCCCCTAGCGTGCAAAGGTGACTTCCCACGGCTGAGTGAGGTCTAATCT
ACACAGGCTGATTATGTAGGCAGGTCCCACGAAGCTCGAAAATTTCTGTT
GGAAATTTCCATTTTGTACCCAGGAGGTCTTGGGACAGAGAGCAGATGGT
TTTATCCAATATGTCCCCATATCCTCAAATTCTCTCTCACTCCCTTGCTC
CCGGGGAACACTTTTGACTTCCATATACAGGAGTCCTAGTCCAGCCCCAA
ACTGCTTCTCCCTGCCAAAAACTTGGTATCTTCCCAAGATGCCTCTGGGT
TCCGGAATCCAGCCCCGCCCTCGCTGGCTGCTCTGCACAGTGGGCTGGGC
GGGCATAAGCAGGATATAAAGCCTTCGTTCAGCCCATACCCCAAGGCTCA
GCTCGTACTAGCCTAGCCTGTATCCAGTCCTAAGGATCTCTCCGAAGAGC
TTTAGGGTCGTCTTGGCAACCAGCTGCTCAGCCAATCAGCGTTCGGTATT
ACGATCCTCCCTCAACATCTGGAGCCATGGCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_i21.g1 MSMg01no054_i21.g1 CHROMAT_FILE:
MSMg01no054_i21.g1 PHD_FILE: MSMg01no054_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:46 2005
         (555 letters)



>mm_chr8_109926835_109927789
          Length = 955

 Score =  951 bits (492), Expect = 0.0
 Identities = 540/556 (97%), Gaps = 2/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcacacgaggacaaatctctctgaactttcagtctagagtcacagtgagtcggcaaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 atttcacacgaggacaagtctctctgaactttcagtctagagtcacagtgagtcggcaaa 696

                                                                       
Query: 61  atttgagcccatcc-ttttcgctgccccacccttcccctagcgtgcaaaggtgacttccc 119
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atttgagcccatccgtttt-gctgccccacccttcccctagcgtgcaaaggtgacttccc 637

                                                                       
Query: 120 acggctgagtgaggtctaatctacacaggctgattatgtaggcaggtcccacgaagctcg 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acggctgagtgaggactaatctacacaggctgattatgtaggcaggtcccacgaagctcg 577

                                                                       
Query: 180 aaaatttctgttggaaatttccattttgtacccaggaggtcttgggacagagagcagatg 239
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 576 aaaaattctgttggaaatttccattttgtacccaggaggtcttgggacagggagcagatg 517

                                                                       
Query: 240 gttttatccaatatgtccccatatcctcaaattctctctcactcccttgctcccggggaa 299
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatttattcaatatgtccccatatcctcaaattctctctcactcccttgctcccggggaa 457

                                                                       
Query: 300 cacttttgacttccatatacaggagtcctagtccagccccaaactgcttctccctgccaa 359
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cccttttgacttccatatacaggagtcctagtccagccccaaactgcttctccctgccaa 397

                                                                       
Query: 360 aaacttggtatcttcccaagatgcctctgggttccggaatccagccccgccctcgctggc 419
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 396 aaacttggtatcttcccaagatgcctctgggttctggagtccagccccgccctcgctggc 337

                                                                       
Query: 420 tgctctgcacagtgggctgggcgggcataagcaggatataaagccttcgttcagcccata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 336 tgctctgcacagtgggctgggcgggcataagcaggatataaagccttcgctcagcccata 277

                                                                       
Query: 480 ccccaaggctcagctcgtactagcctagcctgtatccagtcctaaggatctctccgaaga 539
           |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 276 ccccaaggctcagctcttactagcctagcctgtagccagccctaaggatctctccgaaga 217

                           
Query: 540 gctttagggtcgtctt 555
           ||||||||||||||||
Sbjct: 216 gctttagggtcgtctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |