Query= MSMg01no054_m24.b1 MSMg01no054_m24.b1 CHROMAT_FILE:
MSMg01no054_m24.b1 PHD_FILE: MSMg01no054_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:05 2005
(650 letters)
>mm_chr8_16828623_16829672
Length = 1050
Score = 1205 bits (623), Expect = 0.0
Identities = 641/647 (99%), Gaps = 1/647 (0%)
Strand = Plus / Plus
Query: 5 gaattccttcttctctaa-agtagtctccggcctctccaatgatgcaatttaatacagtt 63
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 gaattccttcttctataacagtagtctccagcctctccaatgatgcaatttaatacagtt 263
Query: 64 cctcatgttatatggtgatcgtcaaacttattttttttgtttctactccataactatact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctcatgttatatggtgatcgtcaaacttattttttttgtttctactccataactatact 323
Query: 124 tttgctactcttatgattcataatacaaacatctgtgttttctgatggtcttagtcaatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgctactcttatgattcataatacaaacatctgtgttttctgatggtcttagtcaatc 383
Query: 184 cctgtgcaacatcatttgacccccacagggtcacaatgcacaggttgctttgggtcatgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctgtgcaacatcatttgacccccacagggtcacaatgcacaggttgctttgggtcatgg 443
Query: 244 tattttatcacaacagaaaagtaatggatacctgaagataaagagcatgatggctacata 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 tattttatcacaacagaaaagtaatggatacctgaagataaagggcatgatggctacata 503
Query: 304 agtaagaaccagattgtatatttattaaagggtgccctgtaaactgtttcaatgtagact 363
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 504 agtaagaaccagattgtatatttattaaagggtgccctataaaatgtttcaatgtagact 563
Query: 364 gaagatgcagcttgtgagaaaagagcttgcccagcatggtttatgcatggggtttgacca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaagatgcagcttgtgagaaaagagcttgcccagcatggtttatgcatggggtttgacca 623
Query: 424 ccagaaccacaaaacaaaaaatgtttttgtggaagacaaatcaggtctgccactttaaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccagaaccacaaaacaaaaaatgtttttgtggaagacaaatcaggtctgccactttaaag 683
Query: 484 tctgtgtagagaacttttctgttttcacactggtatggaagaacattttcactttcaact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctgtgtagagaacttttctgttttcacactggtatggaagaacattttcactttcaact 743
Query: 544 tgatcttaaaatgagagcaatgactttcttaaaaattaaatagttagtacatgcagtgca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgatcttaaaatgagagcaatgactttcttaaaaattaaatagttagtacatgcagtgca 803
Query: 604 atagaagattataaattgtgaaataaaggaatgtaaatggcctgtgc 650
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atagaagattataaattgtgaaataaaggaatgtaaatggcctgtgc 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_m24.g1 MSMg01no054_m24.g1 CHROMAT_FILE:
MSMg01no054_m24.g1 PHD_FILE: MSMg01no054_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:05 2005
(627 letters)
>mm_chr8_16933620_16934646
Length = 1027
Score = 1158 bits (599), Expect = 0.0
Identities = 622/633 (98%), Gaps = 6/633 (0%)
Strand = Plus / Minus
Query: 1 aaatgtgtcatcaactgaaagaagcattgaatggatttgtaacccaacagttaagaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aaatgtgtcatcaactgaaagaagcattgaatggatttgtaacccaacagttaagaagaa 703
Query: 61 tggcaggttgaatagcttatcccaagcagtactggtcctttacacagaaatgacagatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 702 tggcaggttgaatagcttatcccaagcagtactggtcctttacacagaaatgacacatgc 643
Query: 121 aaagttagcaatgacagttgagacacttatggacctgagatctcacattgcccagtccct 180
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 642 aaagtgagcaatgacagttgagacacttatggacccgagatctcacattgcccagtccct 583
Query: 181 cacagtgtgggtagaaaatgaatactccttgtgacctggtcttctcagcaaagccgtatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cacagtgtgggtagaaaatgaatactccttgtgacctggtcttctcagcaaagccgtatc 523
Query: 241 catcagtgttcattcagcatgtcttccagttaaactgcaaaagctctaggtcttggagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 catcagtgttcattcagcatgtcttccagttaaactgcaaaagctctaggtcttggagct 463
Query: 301 aaaaccacaaagaaggggagggaacacaatagcggtactgatgggaaaatgttgggtttt 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 462 aaaaccacaaagaaggggagggaacacaatagcggtactgatgggaaagtgttgggtttt 403
Query: 361 tcactcttagattcatcttgtgatgtaagaaactgaggaggccagtcacaggcaagattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcactcttagattcatcttgtgatgtaagaaactgaggaggccagtcacaggcaagattc 343
Query: 421 agcctatgtgttgctgggtcctggtgtgctgctgtctctgctggatggaagagcagctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agcctatgtgttgctgggtcctggtgtgctgctgtctctgctggatggaagagcagctcc 283
Query: 481 cattttcagaatgattttaattgaacacattcatcttttctgtgcgacttttcattgact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cattttcagaatgattttaattgaacacattcatcttttctgtgcgacttttcattgact 223
Query: 541 aatagtacaaaaacatttttagagcaagcaagcaagcaagc------aaaccaaaccaaa 594
||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 222 aatagtacaaaaacatttttagagcaagcaagcaagcaaaccaaaccaaaccaaaccaaa 163
Query: 595 ccaaaccaaccaaccaaccaaccaaccaaacaa 627
|||||||||||||||||||||||||||||||||
Sbjct: 162 ccaaaccaaccaaccaaccaaccaaccaaacaa 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
