BAC Information

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BAC

Clone NameMSMg01-055B09
Chromosome8 (Build37)
Map Location 90,010,112 - 90,154,454
singlet/doubletdoublet
Overlap geneLOC100040294, 4933402J07Rik
Upstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1
Downstream geneZfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055B09.T7 (MSMg01no055_b09.b1)MSMg01-055B09.TJ (MSMg01no055_b09.g1)
ACCAG282850AG282851
length708738
length of high quality
(start - end)
448 (43 - 490)238 (74 - 311)
definitionCHROMAT_FILE: MSMg01no055_b09.b1 PHD_FILE: MSMg01no055_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:25 2005CHROMAT_FILE: MSMg01no055_b09.g1 PHD_FILE: MSMg01no055_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,010,112 - 90,010,556)(90,154,217 - 90,154,454)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCTTTCCCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCTCACTAAAATCA
GGGACTAGACAAGGCTGTCCACTCTTGCCCTACCTATTCAACATTGTACT
TGAAGTCCTAGCTAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGAGCCTTTTGGTATCTTTTCTTCAGCAACAAAGTAGTG
GACTTGACTTGCCCTCCCGAAGAGAACTGTGTATCATAAATTCCAACCTG
AGCTTCCTAAAGGCATTTTAAGAATGGTAGTTCCCCTTGTGCAGTGTTCA
AAATTGGCATCTTAAAAAAGTGTACTGTGACCATTGGCATTACACATAGA
CGTGAACGATACACAAGATACAACATGGCTTTAGGTATGTTTTGTTCATC
TTGCTTTGTTTTGAAAATGCATCTGCTAGCTAGGTATGCCGATTTATGCC
CACAGCCCCATTGCTTTGTAAGACTGAGGCTGGAGGATGACCAAGTTGAC
GCCACGCTTGGACTAAACAGACCTTATTTTAACAACACTAGACCTGAGAT
GCCGCCCG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCATTGTGCCTTGTCCGACATCTAA
GAGCAGCGAGTGGCCTGCCTGGCATTGAAAAGGAAAAAGTTTCTGCAAGA
CCCACCTGGGGCTCTCAGCCTTGAAGTTGCTGTGAGTCTGGGGCTTGTGA
AGGGAAGCTGATATGGGGGAGGGCTGGATGAAGGTAAGGGACTGGCCTTG
AAGGCCAGGGACGGTGGCCCGAGAGACAGGTTCCTGAACCCTGGCGTGGA
ATGGCACACGTGTGAGGACAGGTGAGTTTCACACCAGGTACACTTGTAGG
GCCCCAGCATTGGAACCCCCACCCCCACCCCAGCATTGCTGCATTTCCTA
AGCCCCCAAGTCTGAAATCTAGAGCCCTTGTGAGACTGATAGGTTCTAGG
TAAAAAGACTTCAAGGCAGTTCAAAGACCGAGAGAGACCGAGGATGATGT
TTCTAGCCTCATCCAACGGGAGGGCTCCCACCTTCCATTCTTTTGAATCA
GGAATCAAGGTGTTTTTAGCCCTTACCAGCCTATAGCTCCCATGTTGTAT
ATTGCTGATGATCTCTTGATGAAATTCCTGCCTGTTTTTTCCATTTTAAT
TTTAGCCTGATTCCTACTCTGGTTTACCTGGCCTGTTAACTAAAAGCAAT
TCGCCGATGTTTCTTGCACCCATGTTTTTTTTTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_b09.b1 MSMg01no055_b09.b1 CHROMAT_FILE:
MSMg01no055_b09.b1 PHD_FILE: MSMg01no055_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:25 2005
         (448 letters)



>mm_chr8_90009909_90010756
          Length = 848

 Score =  830 bits (429), Expect = 0.0
 Identities = 441/445 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaggcctttccctaaacatgataaaagcaatctacagcaaaccagtagccaac 63
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaggcccatacctaaacatgataaaagcaatctacagcaaaccagtagccaac 263

                                                                       
Query: 64  atcaaagtaaatggtgagaagctggaagcaatctcactaaaatcagggactagacaaggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcaaagtaaatggtgagaagctggaagcaatctcactaaaatcagggactagacaaggc 323

                                                                       
Query: 124 tgtccactcttgccctacctattcaacattgtacttgaagtcctagctagagcaattaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtccactcttgccctacctattcaacattgtacttgaagtcctagctagagcaattaga 383

                                                                       
Query: 184 caacaaaaggagatcaaggggatacaaattggaaaggaagaagtcaaaatatcacttttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caacaaaaggagatcaaggggatacaaattggaaaggaagaagtcaaaatatcacttttt 443

                                                                       
Query: 244 gcagatgatatgatagtatatataagtgagccttttggtatcttttcttcagcaacaaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcagatgatatgatagtatatataagtgagccttttggtatcttttcttcagcaacaaag 503

                                                                       
Query: 304 tagtggacttgacttgccctcccgaagagaactgtgtatcataaattccaacctgagctt 363
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 tagtggacttgacttgccctcccgcagagaactgtgtatcataaattccaacctgagctt 563

                                                                       
Query: 364 cctaaaggcattttaagaatggtagttccccttgtgcagtgttcaaaattggcatcttaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctaaaggcattttaagaatggtagttccccttgtgcagtgttcaaaattggcatcttaa 623

                                    
Query: 424 aaaagtgtactgtgaccattggcat 448
           |||||||||||||||||||||||||
Sbjct: 624 aaaagtgtactgtgaccattggcat 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no055_b09.g1 MSMg01no055_b09.g1 CHROMAT_FILE:
MSMg01no055_b09.g1 PHD_FILE: MSMg01no055_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:25 2005
         (238 letters)



>mm_chr8_90154017_90154654
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcattgtgccttgtccgacatctaagagcagcgagtggcctgcctggcattgaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctcattgtgccttgtccgacatctaagagcagcgagtggcctgcctggcattgaaaagg 379

                                                                       
Query: 61  aaaaagtttctgcaagacccacctggggctctcagccttgaagttgctgtgagtctgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaaaagtttctgcaagacccacctggggctctcagccttgaagttgctgtgagtctgggg 319

                                                                       
Query: 121 cttgtgaagggaagctgatatgggggagggctggatgaaggtaagggactggccttgaag 180
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 318 cttgtgaagggaagctgagatgggggagggctggatgaaggtaaggggctggccttgaag 259

                                                                     
Query: 181 gccagggacggtggcccgagagacaggttcctgaaccctggcgtggaatggcacacgt 238
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 258 gccagggacggtggcccgagagacaggttcctgaaccctggtgtggaatggcacacgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)