MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-055C23
Chromosome	8 (Build37)
Map Location	82,399,390 - 82,399,930
singlet/doublet	singlet
Overlap gene	LOC100039439
Upstream gene	EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10
Downstream gene	Hhip, LOC546075, Gypa, Frem3, Smarca5, Gab1, LOC666237
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG666346 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666346 MGI:3643698
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	D630040G17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622675 MGI:2444807
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700011L22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67687 MGI:1914937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein

name	Mmaa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109136 MGI:1923805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A630049P17 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:234479
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Smad1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17125 MGI:109452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666378 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666378
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC666388 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666388
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC666392 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666392
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Otud4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73945 MGI:1098801
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpd52-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107730 MGI:107737
definition	gene_synonym : Tpd52-rs1 note : tumor protein D52, pseudogene pseudo : _no_value

name	Abce1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24015 MGI:1195458
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Anapc10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68999 MGI:1916249
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039439 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039439
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Hhip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15245 MGI:1341847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546075 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546075
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 97 ESTs, 4 Proteins pseudo : _no_value

name	Gypa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14934 MGI:95880
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Frem3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333315 MGI:2685641
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 6 Proteins

name	Smarca5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93762 MGI:1935129
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14388 MGI:108088
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666237 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666237
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 23 Proteins pseudo : _no_value

name	D630040G17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124358943 GeneID:622675 MGI:2444807
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D630040G17 gene transcript_id : NM_178267.3

name	1700011L22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383663 GeneID:67687 MGI:1914937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein product : RIKEN cDNA 1700011L22 gene, transcript variant 1 transcript_id : XM_134463.3

name	Mmaa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383676 GeneID:109136 MGI:1923805
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : methylmalonic aciduria (cobalamin deficiency) type A transcript_id : NM_133823.3

name	A630049P17 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258945 GeneID:234479
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein A630049P17 transcript_id : XM_001472774.1

name	Smad1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476186 GeneID:17125 MGI:109452
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAD homolog 1 (Drosophila) transcript_id : NM_008539.3

name	Otud4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487190 GeneID:73945 MGI:1098801
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : OTU domain containing 4 transcript_id : NM_001081164.1

name	Abce1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114205430 GeneID:24015 MGI:1195458
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family E (OABP), member 1 transcript_id : NM_015751.2

name	Anapc10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130278 GeneID:68999 MGI:1916249
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : anaphase promoting complex subunit 10 transcript_id : NM_026904.2

name	Hhip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328502 GeneID:15245 MGI:1341847
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Hedgehog-interacting protein transcript_id : NM_020259.3

name	Gypa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111185917 GeneID:14934 MGI:95880
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycophorin A transcript_id : NM_010369.3

name	Frem3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383693 GeneID:333315 MGI:2685641
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 6 Proteins product : Fras1 related extracellular matrix protein 3 transcript_id : XM_984073.1

name	Smarca5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254123 GeneID:93762 MGI:1935129
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 transcript_id : NM_053124.2

name	Gab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542870 GeneID:14388 MGI:108088
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth factor receptor bound protein 2-associated protein 1 transcript_id : NM_021356.2

name	D630040G17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124358944 GeneID:622675 MGI:2444807
definition	codon_start : 1 product : hypothetical protein LOC622675 protein_id : NP_839998.2

name	1700011L22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20885420 GeneID:67687 MGI:1914937
definition	codon_start : 1 product : hypothetical protein LOC67687 isoform 1 protein_id : XP_134463.1

name	Mmaa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541923 CCDS:CCDS22436.1 GeneID:109136 MGI:1923805
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA] codon_start : 1 product : methylmalonic aciduria type A protein_id : NP_598584.2

name	A630049P17 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258946 GeneID:234479
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472824.1

name	Smad1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543220 CCDS:CCDS22437.1 GeneID:17125 MGI:109452
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS]; GO:0005622 - intracellular [Evidence IEA] [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA] [Evidence ISS]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005057 - receptor signaling protein activity [Evidence ISS]; GO:0003702 - RNA polymerase II transcription factor activity [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence ISS] GO_process : GO:0030509 - BMP signaling pathway [Evidence IMP] [Evidence ISS] [Evidence TAS]; GO:0007182 - common-partner SMAD protein phosphorylation [Evidence IEA]; GO:0009880 - embryonic pattern specification [Evidence ISS]; GO:0007276 - gametogenesis [Evidence IMP]; GO:0030902 - hindbrain development [Evidence IMP]; GO:0042592 - homeostasis [Evidence IMP]; GO:0000165 - MAPKKK cascade [Evidence IMP]; GO:0030901 - midbrain development [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence ISS]; GO:0007183 - SMAD protein heteromerization [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence ISS] codon_start : 1 note : Smad 1 product : MAD homolog 1 protein_id : NP_032565.2

name	Otud4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487191 GeneID:73945 MGI:1098801
definition	codon_start : 1 product : HIV-1 induced protein HIN-1 protein_id : NP_001074633.1

name	Abce1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114205431 CCDS:CCDS22438.1 GeneID:24015 MGI:1195458
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 note : ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent) inhibitor; RNS4l (Eye) product : ATP-binding cassette, subfamily E, member 1 protein_id : NP_056566.2

name	Anapc10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:35900980 CCDS:CCDS22439.1 GeneID:68999 MGI:1916249
definition	GO_component : GO:0005680 - anaphase-promoting complex [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0030071 - regulation of mitotic metaphase/anaphase transition [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : anaphase-promoting complex subunit 10 protein_id : NP_081180.1

name	Hhip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328503 CCDS:CCDS22440.1 GeneID:15245 MGI:1341847
definition	GO_component : GO:0009986 - cell surface [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0009953 - dorsal/ventral pattern formation [Evidence IGI]; GO:0030324 - lung development [Evidence IMP]; GO:0045879 - negative regulation of smoothened signaling pathway [Evidence IDA]; GO:0007405 - neuroblast proliferation [Evidence IGI]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0040036 - regulation of fibroblast growth factor receptor signaling pathway [Evidence IMP]; GO:0007165 - signal transduction [Evidence IDA]; GO:0007224 - smoothened signaling pathway [Evidence IMP] codon_start : 1 exception : mismatches in translation note : hedgehog-interacting product : Hedgehog-interacting protein protein_id : NP_064655.3

name	Gypa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111185918 GeneID:14934 MGI:95880
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA] GO_process : GO:0007016 - cytoskeletal anchoring [Evidence IMP]; GO:0047484 - regulation of response to osmotic stress [Evidence IMP] codon_start : 1 product : glycophorin A protein_id : NP_034499.3

name	Frem3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94383694 GeneID:333315 MGI:2685641
definition	codon_start : 1 product : similar to FRAS1-related extracellular matrix protein 3 precursor (NV domain-containing protein 2) protein_id : XP_989167.1

name	Smarca5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254124 CCDS:CCDS22442.1 GeneID:93762 MGI:1935129
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence TAS] GO_process : GO:0006333 - chromatin assembly or disassembly [Evidence IDA]; GO:0016568 - chromatin modification [Evidence IEA]; GO:0006338 - chromatin remodeling [Evidence IDA] codon_start : 1 product : SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein_id : NP_444354.2

name	Gab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542871 CCDS:CCDS22443.1 GeneID:14388 MGI:108088
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IDA] GO_process : GO:0007257 - activation of JNK activity [Evidence IMP]; GO:0000187 - activation of MAPK activity [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence IGI]; GO:0006979 - response to oxidative stress [Evidence IDA]; GO:0007165 - signal transduction [Evidence IDA] codon_start : 1 product : growth factor receptor bound protein 2-associated protein 1 protein_id : NP_067331.2

name	EG666346 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666346
definition	number : 3 pseudo : _no_value

name	EG666346 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666346
definition	number : 2 pseudo : _no_value

name	EG666346 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666346
definition	number : 1 pseudo : _no_value

name	LOC666378 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666378
definition	number : 1 pseudo : _no_value

name	LOC666388 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666388
definition	number : 3 pseudo : _no_value

name	LOC666388 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666388
definition	number : 2 pseudo : _no_value

name	LOC666388 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666388
definition	number : 1 pseudo : _no_value

name	LOC666392 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666392
definition	number : 1 pseudo : _no_value

name	LOC100039439 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039439
definition	number : 2 pseudo : _no_value

name	LOC100039439 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039439
definition	number : 1 pseudo : _no_value

name	LOC546075 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258956 GeneID:546075
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 97 ESTs, 4 Proteins product : similar to erythropoietin 4 immediate early response pseudo : _no_value transcript_id : XR_031274.1

name	LOC666237 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258957 GeneID:666237
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 23 Proteins product : similar to lactate dehydrogenase 1, A chain pseudo : _no_value transcript_id : XR_031340.1

clone name	MSMg01-268F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531M04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-448H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332D14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-442P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494M05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-545F08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-543K24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-461G22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-117N02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-186P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492I02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-363M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103N19
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-055C23.T7 (MSMg01no055_c23.b1)	MSMg01-055C23.TJ (MSMg01no055_c23.g1)
ACC	AG282920	AG282921
length	691	990
length of high quality (start - end)	541 (71 - 611)	---
definition	CHROMAT_FILE: MSMg01no055_c23.b1 PHD_FILE: MSMg01no055_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:32 2005	CHROMAT_FILE: MSMg01no055_c23.g1 PHD_FILE: MSMg01no055_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:32 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA TTCAACTAAATTAACTTGGGTAATGGTCTTTACTCACATTTGGTTGGATT GACAACTGAAGGCTCAAGTGCCATTAAGATGCCAGCCCAAATTCTGAATC TGGACTTTCACTCTGGGACTCTAGGACCAGAATGCAGCTTCAGGAACTGG TACATACTTTAAAGATGTGCCAAGACCCCAAGGAATGCTTTCAATTTGAA TTGTTGGAACAAACTGCGGCACCAAGAAGAAACCAATAGGTACCTGTCTA GGGAAGCCTCCATCAGTTAAGTCATGAAAGACTTCTAAGACATCTGGTAT TGTTTCTGGTGGGATCCTGTCTCACGGATAGGGAGTATAGAGATGTTCCT GACAAGGTACAAGTACTCCTGAACAGGGCACCTGCAAGACATTTTTGTTG CCTGGTTCTTAGTTTCCTGTGTTTTGTTTGTCTAATGCCCAGAGCACTAG CAAAAAGTCATTCTATCTTCTGGTTCTTAGATGCTGGTTGTGCATATATG GAAATCTGTCTATCCCTCCTAAATCTATGAATTAAAGTGGCCATCATATT TGTTTTTTGGACTGGTCTCTTTTGACTGTGTGAACATCTGCATTCTGTGT TTACTGGTTTTGTTTTTTGCTGCGCTGTTAAAATCTGCCGN	TTACGCGTGGGTAGGGGCCGCCGCGGTGTTCCGGCGCTGCGGCGGCGTTG TCATGCGAGTTTGTTGTTTTCCTGTGTCGCCGCCCGTCCATTCTTTTGTG AGATTATTTAATTTCGTCGCGCGGTTGTTTTGGGCGGCCGGTTCATGTTG TCGCGCGTTGTTTTTATTTCCGCGCGCGGTGGGTGGGTTAATTGTGGTGG AACGTGCGGGTGTCCGGGTTGCGTCGCGCGGCCGCGGCAGTTTTTGTGCG GTTGTTGGCGTTCTGGCGTGTTCCTTTGCGGCTGGCTGCGTGGTGCGCAC TGGTTGTGTTGTTCTCTTTGGGCGCTCGCGGCGGTCCTCGTTTTTGGTTG CGCTGTTCGACGGCCTTGTATAGCTGTGGGGTTGTTTTTTTTCCCCCCCC GCGTTTGTTCGCTCCCTGTGTTTGTTTTCCTTGGGTTACCTTCCCTGGTG TTCCGCGTGTTCTCCCGTTCGTGTTGTTTTCGTTCCGGGCGTGGCGGTTG TGTTATTTTCTTCCCTTCGTTGTTTTTTTGGTTTGTGCTTGTGCTTCGTG TTCTGGCCCTTCTTCCTGCCGCGTTCGTGCTTTTTGTGTTTCTTATTCGG TTCCCTGTTCTACCCGCCTGTTCGCCCCCTTTTTTGGTTTTACTTTCCTT GCTTTTTGCGCGTTTTTGTCTTGTTTCCGCTGCCGCTCGTCGGCGTTGTT CGTGTCGGCGTCGCGGCGGTCGTTTGTGGGTTTTTTTTCCGCGCTCATTT TGCCTGGCGCCGTGCCCCCCCTGTTTTCTTTTTTTTTTTTCGCCCGGTTT TTCCGCGTCGTTTGTCCGGTGGGTGCGTGTGCGGGCGTTGCTTGTCCCGT TCTTGGCGTCGGAGTCTATGTTGCGGGCTATGTTTGGCTCTGTTGCTATG TTGCGGTTTTTCGCGTTTGGTTCGCGTTTATTCCCGTCGTTGCACCGTTC GCTCTTACGTTGTCCGGTTGTCCGCTTTTCCCTTTTTGTG
quality values	Open. Hide. 8 8 11 11 11 28 24 43 39 29 27 24 22 15 19 9 9 10 20 20 47 46 43 28 24 24 20 20 21 23 9 8 8 8 8 8 17 24 15 16 10 12 12 26 29 48 48 36 36 36 31 33 39 33 33 33 30 27 16 12 12 8 6 6 6 8 11 14 20 20 18 18 29 29 32 32 39 36 43 43 57 59 47 53 47 47 47 47 48 47 47 43 47 59 59 48 48 48 48 48 37 37 36 36 42 36 57 57 57 48 48 47 43 37 37 28 24 14 12 11 9 9 10 18 22 30 33 36 36 37 37 47 39 39 39 42 48 57 57 57 50 48 47 47 57 43 43 43 48 48 50 54 54 54 54 54 57 57 57 54 54 54 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 57 57 47 47 47 47 50 48 59 59 59 57 57 57 57 57 57 57 57 57 57 47 47 47 47 47 59 57 57 57 57 57 57 57 59 57 57 57 57 57 57 68 68 57 57 52 52 52 52 57 57 54 54 52 52 57 57 57 57 57 68 68 68 68 57 57 52 52 57 57 57 57 57 57 57 54 59 59 59 52 54 57 57 57 57 57 57 57 57 59 57 57 57 54 57 54 57 44 43 32 23 23 36 44 57 57 57 57 57 44 43 43 43 59 59 59 57 57 54 54 57 57 59 57 43 43 39 43 43 57 57 57 57 48 47 47 43 43 36 32 24 21 14 14 14 15 15 20 41 40 59 48 48 48 54 48 48 48 43 43 37 37 35 37 36 43 43 39 43 36 32 39 39 39 48 59 59 47 34 37 28 21 18 12 11 11 12 21 27 30 33 23 23 20 18 12 9 9 9 9 13 23 26 37 33 39 37 36 36 39 43 43 48 48 48 48 54 54 54 54 59 48 47 37 33 30 37 37 57 57 57 57 57 57 57 57 48 54 57 57 57 57 57 47 47 44 43 36 41 28 28 28 33 44 44 42 42 35 42 42 48 47 48 48 48 57 48 54 54 57 48 48 48 48 46 46 43 37 37 37 46 42 42 31 31 31 37 40 43 42 42 36 36 35 35 35 37 42 43 43 43 37 31 24 19 19 19 28 40 37 57 44 44 33 30 28 32 32 43 30 32 19 17 12 20 12 18 18 32 32 48 48 48 48 43 43 43 43 43 43 43 59 43 39 39 30 30 30 37 28 24 12 12 11 21 21 34 32 30 22 22 18 22 22 28 28 35 35 35 33 30 28 28 22 18 12 14 14 16 16 12 12 12 16 24 39 39 47 47 48 48 48 48 43 37 32 28 28 32 37 43 26 19 10 10 10 16 18 28 20 23 23 23 23 34 40 32 43 39 43 44 37 36 36 30 30 37 37 43 37 28 19 13 12 19 19 23 15 15 11 16 16 19 19 31 31 33 28 23 23 24 28 24 13 10 12 16 14 22 18 22 33 29 31 30 19 19 10 11 12 20 15 19 24 22 19 22 22 23 27 18 18 20 17 13 14 10 13 13 24 26 36 24 23 12 12 12 16 12 10 11 11 11 11 11 11 10 10 10 10 15 13 3 0	Open. Hide. 11 11 9 9 8 8 8 8 8 8 11 9 11 11 13 13 11 11 10 10 13 10 8 8 8 7 7 12 11 10 6 6 8 8 8 8 8 8 8 8 8 9 10 9 12 10 8 8 8 8 8 8 9 11 11 10 10 10 10 13 13 13 11 10 8 13 8 8 9 11 10 9 9 10 9 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 9 9 8 8 8 9 10 8 8 8 8 8 10 7 6 8 8 8 8 9 9 9 9 10 10 10 8 8 8 8 8 7 7 12 11 17 8 8 6 6 8 8 11 11 9 9 8 10 8 8 10 9 9 10 12 10 8 8 8 8 8 6 6 6 6 8 12 12 18 14 10 13 9 9 9 12 16 8 8 6 6 6 6 8 8 11 7 9 10 10 8 6 6 8 8 8 6 6 6 6 12 10 9 10 9 9 9 9 8 8 8 8 8 6 6 7 11 8 9 9 8 8 10 10 10 10 8 13 8 9 9 9 9 6 8 6 7 8 8 8 8 8 8 8 8 8 6 7 12 7 11 10 10 8 8 8 8 8 12 11 8 8 8 8 8 6 6 8 8 8 8 8 9 9 10 8 8 8 8 8 8 11 9 13 10 8 6 6 8 8 8 8 8 9 12 8 8 8 10 10 8 8 10 9 9 9 10 9 9 9 10 10 15 14 12 12 8 8 10 8 8 8 8 10 9 10 13 14 14 10 10 8 8 8 8 8 8 13 8 9 8 10 11 10 8 8 10 10 13 13 13 11 11 12 12 11 10 10 8 8 10 15 13 10 10 9 8 8 8 8 10 8 8 8 10 6 6 6 6 6 6 8 8 8 8 8 6 8 8 8 8 6 7 7 8 9 11 10 10 8 8 8 8 13 12 9 9 10 8 12 8 8 8 10 10 13 8 8 6 6 8 6 7 8 8 8 7 7 15 19 19 19 11 13 8 12 12 8 9 8 8 8 8 11 9 9 9 11 11 11 8 8 6 6 10 12 13 9 9 12 10 10 8 8 8 11 11 8 8 6 7 8 7 8 10 8 8 8 11 8 13 12 15 15 16 22 15 12 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 11 13 10 10 10 10 8 8 8 8 8 6 6 8 8 6 6 8 13 9 7 8 6 6 8 8 11 8 8 10 8 8 8 9 9 9 12 10 10 9 9 8 10 10 8 8 8 9 9 9 9 11 9 9 9 8 8 8 10 10 10 11 9 9 9 9 9 10 10 10 10 8 8 9 9 13 10 8 8 8 8 13 13 15 14 8 6 6 6 8 8 8 8 8 8 8 8 8 14 10 8 8 8 8 7 8 8 8 8 8 8 8 6 6 10 8 8 8 8 8 10 8 8 8 8 10 8 8 8 8 8 8 13 8 8 8 8 8 10 9 9 9 11 12 12 11 12 12 12 12 8 8 8 8 8 10 13 10 24 15 17 8 8 8 6 9 9 10 19 10 10 8 8 8 8 8 9 11 8 8 10 8 8 8 6 6 8 6 9 10 9 8 7 10 6 6 8 6 6 8 8 9 9 9 9 8 8 10 10 10 8 8 8 10 10 12 13 11 15 15 11 8 8 6 6 8 9 9 19 23 14 10 10 6 6 6 8 9 10 10 10 12 11 11 9 9 9 9 9 9 9 12 14 16 15 19 13 13 9 9 9 10 10 9 10 10 12 11 13 8 8 8 8 8 8 12 15 15 21 21 30 16 12 8 6 6 8 6 6 6 8 7 16 18 21 10 10 10 10 10 8 8 8 11 8 8 6 6 8 6 8 8 8 8 10 8 10 8 11 7 9 9 9 8 8 8 8 8 8 8 8 8 8 8 10 12 14 10 10 8 8 8 8 10 12 15 14 13 12 7 6 8 8 8 8 8 8 8 8 8 8 6 6 8 12 10 8 8 8 8 6 6 8 8 9 13 12 11 12 11 10 10 8 8 8 10 10 12 10 10 9 9 8 8 6 6 6 8 8 10 13 22 26 22 10 6 6 8 8 8 7 8 9 12 12 8 8 8 8 13 8 6 6 6 6 6 7 8 8 8 10 8 8 8 8 7 6 6 6 8 15 15 10 6 6 6 10 10 10 8 8 8 8 9 11 11 7 7 6 7 10 12 12 10 8 8 6 6 6 10 14 16 17 11 11 10 10 10 13 18 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no055_c23.b1 MSMg01no055_c23.b1 CHROMAT_FILE:
MSMg01no055_c23.b1 PHD_FILE: MSMg01no055_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:32 2005
         (541 letters)



>mm_chr8_82399190_82400130
          Length = 941

 Score = 1007 bits (521), Expect = 0.0
 Identities = 536/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatggtctttactcacatttggttggattgacaactgaaggctcaagtgccattaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 taatggtctttactcacatttggttggattgacaactgaaggctcaagtgagattaagat 260

                                                                       
Query: 61  gccagcccaaattctgaatctggactttcactctgggactctaggaccagaatgcagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccagcccaaattctgaatctggactttcactctgggactctaggaccagaatgcagctt 320

                                                                       
Query: 121 caggaactggtacatactttaaagatgtgccaagaccccaaggaatgctttcaatttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaactggtacatactttaaagatgtgccaagaccccaaggaatgctttcaatttgaa 380

                                                                       
Query: 181 ttgttggaacaaactgcggcaccaagaagaaaccaataggtacctgtctagggaagcctc 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttggaacaaactgctgcaccaagaagaaaccaataggtacctgtctagggaagcctc 440

                                                                       
Query: 241 catcagttaagtcatgaaagacttctaagacatctggtattgtttctggtgggatcctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcagttaagtcatgaaagacttctaagacatctggtattgtttctggtgggatcctgt 500

                                                                       
Query: 301 ctcacggatagggagtatagagatgttcctgacaaggtacaagtactcctgaacagggca 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcagggatagggagtatagagatgttcctgacaaggtacaagtactcctgaacagggca 560

                                                                       
Query: 361 cctgcaagacatttttgttgcctggttcttagtttcctgtgttttgtttgtctaatgccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgcaagacatttttgttgcctggttcttagtttcctgtgttttgtttgtctaatgccc 620

                                                                       
Query: 421 agagcactagcaaaaagtcattctatcttctggttcttagatgctggttgtgcatatatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagcactagcaaaaagtcattctatcttctggttcttagatgctggttgtgcatatatg 680

                                                                       
Query: 481 gaaatctgtctatccctcctaaatctatgaattaaagtggccatcatatttgttttttgg 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 gaaatctgtctatccctcctaaatctatgaattaaggtggccatcatatttgttttttgg 740

            
Query: 541 a 541
           |
Sbjct: 741 a 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

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