BAC Information

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BAC

Clone NameMSMg01-055E15
Chromosome8 (Build37)
Map Location 109,751,056 - 109,751,476
singlet/doubletsinglet
Overlap genenone
Upstream genePrmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b
Downstream geneLOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055E15.T7 (MSMg01no055_e15.b1)MSMg01-055E15.TJ (MSMg01no055_e15.g1)
ACCAG282998AG282999
length715738
length of high quality
(start - end)
426 (44 - 469)415 (78 - 492)
definitionCHROMAT_FILE: MSMg01no055_e15.b1 PHD_FILE: MSMg01no055_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:40 2005CHROMAT_FILE: MSMg01no055_e15.g1 PHD_FILE: MSMg01no055_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCATATCTGTAGTTTTTGTGTAAACTCGAAATTGTGCCAAAACAAG
AGCCTCCTAAGTCCTCTGCAGAGGGGGAGGGCCAGCAGTGTCCCCTCTTT
CACAGCAGGTGAAAGCAGCTGCTGAGATCAGCTGGCTGCCAGTCTCCTGT
GTGAAGGAGTGGCCTGAGTCTCAGTGCTGAGGTGACAAGTGGCTGAGTGA
TAGCATCTGCCAGCAGATGGTTAGGGACCCCAGCACCACACAAGTGTTGA
ATCGTCCTTGTCCTTGTGTGCAAGCTTTGTCCATCCCTGTTACCACCCAG
AGTCTATCCCTAAAAGCTCTGTGTCATCTTGCTGTCCTTGCCTTGGATTT
GTGGGCCATCTCAGTGGCCGAGCCGTGACATCGCCATCTTAGAAATTGAG
TTCCGTCTGCTGATTGGGTCTTGGGCTACAAGACAGAGATCTTTCCTGAC
CCCCCAGATCAAAGACAAAATTCCCCACATTCCCAAGAACATCCTCTGAG
TCAGAGGCTCAATGTAACCGAATCTGCGCTGGCCCATTATCGAGATATTC
ACACACACTTTCACACACACACAACCCGCACTCTTTACATGGTTCACCTT
CTCTCATCTCTTCCAATTCTCCATCATACACTTCTTGTTTCTCTACTTCA
TCTTTTCCCCGCATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATAAGGAAACTTGGTGAAGA
CAGTCTCTTTCCAGAGGTCAGGGGTCAGGTAGCTGTAAGTCTTGGAGATG
GCATCAAAGGTGGCCTTAGCAAAGTTGCTCAGGGTGGCAGAGCAGCCTCT
GGCTGAAGTGTAGCAGTCATCTATACCGGCCATCATCAGGAGCTTCTTGG
GCACAGGAGCAGAGACAATGCCAGTGCCTCTGGGGGCAGGGATGAGACGC
ACCAGCACAGAGCCACAGCGGCCTGTCACCTTGCATGGAAAAGTGTGGGG
CTTGCCAATCTTGTTCCCCCAGTAGCCTCTCCGCACAGGGACGATGGAAA
GCTTGGCCAAGATGATGACCCCTCGGATGGCAGTGGCAACCTCCTTGGAG
CACTTAACACCAAGACCAACGTGACCATTGTAGTCCCCAATAGCGACTAA
AGCCTTGAACCTGGTCCGCTGGTCAGCCCGAGTCTGCTTCTGCACTGGCA
TGATTTTCAGAACCTCATCCTTTAGGCACGCACCCAGGATGAAGTCAATG
ATCTCAGACTCCTTACTGGTCAAGGAGAACAGGTAGATCTCCTCCAAGGA
CTTGATCTTCATGCCCTTAACCAGGCAGTCCAGCTTGGTGACGGGGATCC
TACTCTTGCCTTCAGTTTTACCTCCACGAGCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_e15.b1 MSMg01no055_e15.b1 CHROMAT_FILE:
MSMg01no055_e15.b1 PHD_FILE: MSMg01no055_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:40 2005
         (426 letters)



>mm_chr8_109750852_109751677
          Length = 826

 Score =  745 bits (385), Expect = 0.0
 Identities = 412/421 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcatatctgtagtttttgtgtaaactcgaaattgtgccaaaacaagagcctcc 64
           ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 625 gaattcttcatatttgtagtttttgcgaaaactcgaaattgtgccaaaacaagagcctcc 566

                                                                       
Query: 65  taagtcctctgcagagggggagggccagcagtgtcccctctttcacagcaggtgaaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taagtcctctgcagagggggagggccagcagtgtcccctctttcacagcaggtgaaagca 506

                                                                       
Query: 125 gctgctgagatcagctggctgccagtctcctgtgtgaaggagtggcctgagtctcagtgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctgctgagatcagctggctgccagtctcctgtgtgaaggagtggcctgagtctcagtgc 446

                                                                       
Query: 185 tgaggtgacaagtggctgagtgatagcatctgccagcagatggttagggaccccagcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 tgaggtgacaagtggctgagtgatagcatctgccagcagatggttagggaccccagcgcc 386

                                                                       
Query: 245 acacaagtgttgaatcgtccttgtccttgtgtgcaagctttgtccatccctgttaccacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacaagtgttgaatcgtccttgtccttgtgtgcaagctttgtccatccctgttaccacc 326

                                                                       
Query: 305 cagagtctatccctaaaagctctgtgtcatcttgctgtccttgccttggatttgtgggcc 364
           ||||||| | |||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 325 cagagtcaaaccctaaaagctctgtgtcatcttgctgtccttgccttggatttacgggcc 266

                                                                       
Query: 365 atctcagtggccgagccgtgacatcgccatcttagaaattgagttccgtctgctgattgg 424
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 atctcagtggccgagccgtgacatcgctatcttagaaattgagttccgtctgctgattgg 206

            
Query: 425 g 425
           |
Sbjct: 205 g 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)