BAC Information

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BAC

Clone NameMSMg01-055F08
Chromosome8 (Build37)
Map Location 59,623,613 - 59,706,530
singlet/doubletdoublet
Overlap genenone
Upstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
Downstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055F08.T7 (MSMg01no055_f08.b1)MSMg01-055F08.TJ (MSMg01no055_f08.g1)
ACCAG283032AG283033
length707725
length of high quality
(start - end)
315 (44 - 358)368 (77 - 444)
definitionCHROMAT_FILE: MSMg01no055_f08.b1 PHD_FILE: MSMg01no055_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:43 2005CHROMAT_FILE: MSMg01no055_f08.g1 PHD_FILE: MSMg01no055_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,623,613 - 59,623,923)(59,706,165 - 59,706,530)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGAACATACACAGCATCTGTGATGTAAGACAGGAAAGGCAAGCCAC
TGAGACACAGGAAGAACTCCATCATGGGTGGAAACATAAAGTGAATAGAT
CACAGGAGACCTGAGATGAAACAGCTCCAAACCTGAAGGGACAGATTGCA
GAGCACGGAGGAACTAAGGAGCCAGAACAGTGACTCATGGTGGCATGCTC
TAAAGACAGAGACAAGCAGAACACAGAGAAACCGATGGATCTGAGAGATT
TTAAATGGTGAAACAAGCCAACAGGGTGGCACAATATCATTCATTTAAAT
TCAGATGATTGTAAGACAGAGCTCGCGGAGGGAAAGGTGAAGATGAAAGG
AAAAAAGGAGGGTGAAGATCTGTCCATTTGCTTCCTTTGGGAAGGTTTGG
CTTCCAGGCACGTGTGTAGTATCTAAATGTAGATGAGCTGACCACATTCA
ATCACAGAGTTCTGGAGTTCATAATTGATACATAAATTTTGCAATAGTCA
CTGAAGAGCAAGGATTCTAAAGTTTAAGCTTCTCTTTATTTAGTTTCTTG
GCGGAGAATATTTAATTAATGCGTTCATGATGCACATTTGATGTACCTTA
CAAATTCAACATGCAGTCCTTCGTTGGCATTCAACTCATAGAATTCTCTG
ATTTTCG
TCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATACCTGCTATTCAAATTGCTAC
TGTTGCTTTGATTAGTTCTCTGTTGTTCAAAGTCTGTGTTGGAGTTCCTG
GTAAGAAATGGATGCTTCTCATGTTTATGTTCTTATTCTGTGAACCTATG
GATGTTTTAGACTATAGGACAAAGGAGACTTTGCAGATGTGACTAAGGCT
AAAAGTTGTGAGTTAGTGAGATTATCCTAAGACCATCTTGATTACATGAT
TATAAAGATGCAGTATGAGAGATCTTTAACATATTCCCACAGTTGTTGAC
TTTGAATATTGAAGGAGCCAAGAATCAAGGGACATGAGTTGGTAGTAGAC
AATAGCGTGGCTCTCAGTGGTTACTATGGAACAAAATTGACACAGCCACG
AAAAAATTTATACATCTGCTGTACAATGAGAAAATTGCTTCTCCAGTAAT
TTCTGGGAGGAAAGCTGTCTGTTGGTATCATGATTTTTTTGTTCAGTTAG
ATCCATGCTAGATTTCTAAGGCAGAGAACTACAAAATAATGAATGTGTAT
TGTGTTAGCTTCTAGTCACTTCTATGGATTTACTTTATTTTAGAAATCTA
TGTACTATATGTATGTATGTATACTTGCGAGTGCATACGGTTGCAGTTTG
CTCCTTTGCATTATTTATCTCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_f08.b1 MSMg01no055_f08.b1 CHROMAT_FILE:
MSMg01no055_f08.b1 PHD_FILE: MSMg01no055_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:43 2005
         (315 letters)



>mm_chr8_59623409_59624123
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaacatacacagcatctgtgatgtaagacaggaaaggcaagccactgagaca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaacataaacagcatctgtgatgtaagacaggaaaggcaagccactgagaca 264

                                                                       
Query: 65  caggaagaactccatcatgggtggaaacataaagtgaatagatcacaggagacctgagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caggaagaactccatcatgggtggaaacataaagtgaatagatcacaggagacctgagat 324

                                                                       
Query: 125 gaaacagctccaaacctgaagggacagattgcagagcacggaggaactaaggagccagaa 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 gaaacagctccaaacctgaagggacagattgcagagcgcggaggaactaaggagccagaa 384

                                                                       
Query: 185 cagtgactcatggtggcatgctctaaagacagagacaagcagaacacagagaaaccgatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtgactcatggtggcatgctctaaagacagagacaagcagaacacagagaaaccgatg 444

                                                                       
Query: 245 gatctgagagattttaaatggtgaaacaagccaacagggtggcacaatatcattcattta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatctgagagattttaaatggtgaaacaagccaacagggtggcacaatatcattcattta 504

                      
Query: 305 aattcagatga 315
           |||||||||||
Sbjct: 505 aattcagatga 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no055_f08.g1 MSMg01no055_f08.g1 CHROMAT_FILE:
MSMg01no055_f08.g1 PHD_FILE: MSMg01no055_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:43 2005
         (368 letters)



>mm_chr8_59705763_59706530
          Length = 768

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   tacctgctattcaaattgctactgttgctttgattagttctctgttgttcaaagtctgtg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tacctgctattcaaattgctactgttgctttgattagttctctgttgttcaaagtctgtg 709

                                                                       
Query: 63  ttggagttcctggtaagaaatggatgcttctcatgtttatgttcttattctgtgaaccta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ttggagttcctggtaagaaatggatgcttctcatgtttatgttcttattctgtgaaccta 649

                                                                       
Query: 123 tggatgttttagactataggacaaaggagactttgcagatgtgactaaggctaaaagttg 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 648 tggatgttttagactataggacaaaggagactttgcagatgtgactaaggctaaaagtcg 589

                                                                       
Query: 183 tgagttagtgagattatcctaagaccatcttgattacatgattataaagatgcagtatga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgagttagtgagattatcctaagaccatcttgattacatgattataaagatgcagtatga 529

                                                                       
Query: 243 gagatctttaacatattcccacagttgttgactttgaatattgaaggagccaagaatcaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gagatctttaacatattcccacagttgttgactttgaatattgaaggagccaagaatcaa 469

                                                                       
Query: 303 gggacatgagttggtagtagacaatagcgtggctctcagtggttactatggaacaaaatt 362
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 468 gggacatgagttggtagtagacaatagcatggctctcagtggttactatggaacaaaatt 409

                 
Query: 363 gacaca 368
           ||||||
Sbjct: 408 gacaca 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)