MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-055I05
Chromosome	8 (Build37)
Map Location	113,997,900 - 113,998,001
singlet/doublet	singlet
Overlap gene	Wdr59
Upstream gene	Hydin, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h
Downstream gene	Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Link	Open Mouse BAC browser

Click to get alignment info.

name	Hydin (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244653 MGI:2389007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vac14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234729 MGI:2157980
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC060632 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244654 MGI:3039591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010004A03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76527 MGI:1923777
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sf3b3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101943 MGI:1289341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cog4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102339 MGI:2142808
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fuk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234730 MGI:1916071
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	St3gal2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20444 MGI:99427
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ddx19a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13680 MGI:99526
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddx19b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234733 MGI:2148251
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aars (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234734 MGI:2384560
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Exosc6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72544 MGI:1919794
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrcl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:353287 MGI:2672935
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930402E16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319518 MGI:2442188
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9430091E24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434350 MGI:1924618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Glg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20340 MGI:104967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rfwd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234736 MGI:2384584
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC547023 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 485 ESTs, 6 Proteins pseudo : _no_value

name	Mlkl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74568 MGI:1921818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fa2h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338521 MGI:2443327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr59 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319481 MGI:2442115
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Znrf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170737 MGI:2177308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ldhd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52815 MGI:106428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22640 MGI:99154
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ctrb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66473 MGI:88559
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bcar1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12927 MGI:108091
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cfdp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23837 MGI:1344403
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem170 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66817 MGI:106426
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chst5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56773 MGI:1931825
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932417I16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234740 MGI:2685024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gabarapl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93739 MGI:1890602
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30947 MGI:1353631
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kars (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:85305 MGI:1934754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Terf2ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57321 MGI:1929871
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG627828 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627828 MGI:3643578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 106 ESTs, 42 Proteins

name	LOC672498 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:672498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs

name	LOC100042040 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042040
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 4 Proteins pseudo : _no_value

name	Hydin (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31541985 GeneID:244653 MGI:2389007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hydrocephalus inducing transcript_id : NM_172916.2

name	Vac14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542487 GeneID:234729 MGI:2157980
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Vac14 homolog (S. cerevisiae) transcript_id : NM_146216.2

name	BC060632 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348491 GeneID:244654 MGI:3039591
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC060632 transcript_id : NM_198625.1

name	2010004A03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33239432 GeneID:76527 MGI:1923777
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010004A03 gene transcript_id : NM_029646.1

name	Sf3b3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118498348 GeneID:101943 MGI:1289341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor 3b, subunit 3 transcript_id : NM_133953.2

name	Cog4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118498357 GeneID:102339 MGI:2142808
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : component of oligomeric golgi complex 4 transcript_id : NM_133973.2

name	Fuk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41281970 GeneID:234730 MGI:1916071
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fucokinase transcript_id : NM_181666.1

name	Fuk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981685 GeneID:234730 MGI:1916071
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fucokinase transcript_id : NM_172283.2

name	St3gal2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348044 GeneID:20444 MGI:99427
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ST3 beta-galactoside alpha-2,3-sialyltransferase 2 transcript_id : NM_178048.3

name	St3gal2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366416 GeneID:20444 MGI:99427
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ST3 beta-galactoside alpha-2,3-sialyltransferase 2 transcript_id : NM_009179.2

name	Ddx19a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6681290 GeneID:13680 MGI:99526
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a transcript_id : NM_007916.1

name	Ddx19b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801929 GeneID:234733 MGI:2148251
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b transcript_id : NM_172284.3

name	Aars (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254406 GeneID:234734 MGI:2384560
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alanyl-tRNA synthetase transcript_id : NM_146217.3

name	Exosc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383043 GeneID:72544 MGI:1919794
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exosome component 6 transcript_id : NM_028274.2

name	Mrcl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31581539 GeneID:353287 MGI:2672935
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mannose receptor-like precursor transcript_id : NM_181549.2

name	4930402E16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38142487 GeneID:319518 MGI:2442188
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930402E16 gene transcript_id : NM_198308.1

name	9430091E24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383826 GeneID:434350 MGI:1924618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 9430091E24 gene transcript_id : XM_489247.4

name	Glg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130514 GeneID:20340 MGI:104967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : golgi apparatus protein 1 transcript_id : NM_009149.2

name	Rfwd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383539 GeneID:234736 MGI:2384584
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger and WD repeat domain 3 transcript_id : NM_146218.3

name	Mlkl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802525 GeneID:74568 MGI:1921818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mixed lineage kinase domain-like transcript_id : NM_029005.2

name	Fa2h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342560 GeneID:338521 MGI:2443327
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fatty acid 2-hydroxylase transcript_id : NM_178086.2

name	Wdr59 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372339 GeneID:319481 MGI:2442115
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 59 transcript_id : NM_176923.3

name	Znrf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56711336 GeneID:170737 MGI:2177308
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc and ring finger 1 transcript_id : NM_133206.2

name	Ldhd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328378 GeneID:52815 MGI:106428
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lactate dehydrogenase D transcript_id : NM_027570.3

name	Zfp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83404684 GeneID:22640 MGI:99154
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 1 transcript_id : NM_011742.2

name	Zfp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109659837 GeneID:22640 MGI:99154
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 1 transcript_id : NM_001037665.2

name	Ctrb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385031 GeneID:66473 MGI:88559
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chymotrypsinogen B1 transcript_id : NM_025583.1

name	Bcar1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254592 GeneID:12927 MGI:108091
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : breast cancer anti-estrogen resistance 1 transcript_id : NM_009954.2

name	Cfdp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753411 GeneID:23837 MGI:1344403
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : craniofacial development protein 1 transcript_id : NM_011801.1

name	Tmem170 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383256 GeneID:66817 MGI:106426
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 170 transcript_id : NM_025781.2

name	Chst5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110815848 GeneID:56773 MGI:1931825
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 transcript_id : NM_019950.2

name	4932417I16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75677479 GeneID:234740 MGI:2685024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932417I16 gene transcript_id : NM_001033321.1

name	Gabarapl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354357 GeneID:93739 MGI:1890602
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-A) receptor-associated protein-like 2 transcript_id : NM_026693.3

name	Adat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802291 GeneID:30947 MGI:1353631
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenosine deaminase, tRNA-specific 1 transcript_id : NM_013925.3

name	Kars (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16716380 GeneID:85305 MGI:1934754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lysyl-tRNA synthetase transcript_id : NM_053092.1

name	Terf2ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:15618998 GeneID:57321 MGI:1929871
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : telomeric repeat binding factor 2, interacting protein transcript_id : NM_020584.1

name	EG627828 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259096 GeneID:627828 MGI:3643578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 95 ESTs, 19 Proteins product : predicted gene, EG627828, transcript variant 1 transcript_id : XM_895041.3

name	EG627828 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259095 GeneID:627828 MGI:3643578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 106 ESTs, 41 Proteins product : predicted gene, EG627828, transcript variant 5 transcript_id : XM_902467.3

name	LOC672498 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259099 GeneID:672498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical LOC672498, transcript variant 2 transcript_id : XM_001479965.1

name	LOC672498 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259097 GeneID:672498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC672498, transcript variant 1 transcript_id : XM_001479960.1

name	Hydin (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46361984 GeneID:244653 MGI:2389007
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : hydrocephalus 3 product : hydrocephalus inducing protein_id : NP_766504.3

name	Vac14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542488 CCDS:CCDS22663.1 GeneID:234729 MGI:2157980
definition	GO_component : GO:0005774 - vacuolar membrane [Evidence ISS] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0019209 - kinase activator activity [Evidence ISS] GO_process : GO:0006970 - response to osmotic stress [Evidence ISS] codon_start : 1 note : Tax1 (human T-cell leukemia virus type I) binding protein 1; Tax1 (human T-cell leukemia virus type I) binding protein 2; vacuole morphology 14 product : Vac14 homolog protein_id : NP_666328.2

name	BC060632 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348492 CCDS:CCDS22664.1 GeneID:244654 MGI:3039591
definition	codon_start : 1 product : hypothetical protein LOC244654 protein_id : NP_941027.1

name	2010004A03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33239433 GeneID:76527 MGI:1923777
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : hypothetical protein LOC76527 protein_id : NP_083922.1

name	Sf3b3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527174 CCDS:CCDS22665.1 GeneID:101943 MGI:1289341
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 product : splicing factor 3b, subunit 3 protein_id : NP_598714.1

name	Cog4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527194 GeneID:102339 MGI:2142808
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : component of oligomeric golgi complex 4 protein_id : NP_598734.1

name	Fuk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981686 CCDS:CCDS22666.1 GeneID:234730 MGI:1916071
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0050201 - fucokinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; L-fucose kinase; mFLJ00241 protein product : fucokinase isoform 1 protein_id : NP_758487.2

name	Fuk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41281971 CCDS:CCDS22666.1 GeneID:234730 MGI:1916071
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0050201 - fucokinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; L-fucose kinase; mFLJ00241 protein product : fucokinase isoform 2 protein_id : NP_858052.1

name	St3gal2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677961 CCDS:CCDS22667.1 GeneID:20444 MGI:99427
definition	GO_component : GO:0030173 - integral to Golgi membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008373 - sialyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006486 - protein amino acid glycosylation [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; sialyltransferase 5 product : ST3 beta-galactoside alpha-2,3-sialyltransferase 2 isoform 1 protein_id : NP_033205.1

name	St3gal2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017335 GeneID:20444 MGI:99427
definition	GO_component : GO:0030173 - integral to Golgi membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008373 - sialyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006486 - protein amino acid glycosylation [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : isoform 2 is encoded by transcript variant 2; sialyltransferase 5 product : ST3 beta-galactoside alpha-2,3-sialyltransferase 2 isoform 2 protein_id : NP_835149.1

name	Ddx19a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681291 CCDS:CCDS22668.1 GeneID:13680 MGI:99526
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : eukaryotic translation initiation factor 4A related sequence 1; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 product : Ddx19-like protein protein_id : NP_031942.1

name	Ddx19b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26986593 CCDS:CCDS22669.1 GeneID:234733 MGI:2148251
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 product : DDX19 homolog protein_id : NP_758488.1

name	Aars (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610207 GeneID:234734 MGI:2384560
definition	GO_function : GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]; GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 product : alanyl-tRNA synthetase protein_id : NP_666329.2

name	Exosc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794378 GeneID:72544 MGI:1919794
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 product : Mtr3 (mRNA transport regulator 3)-homolog protein_id : NP_082550.1

name	Mrcl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559797 GeneID:353287 MGI:2672935
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA] codon_start : 1 product : mannose receptor-like protein_id : NP_853527.1

name	4930402E16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38142488 CCDS:CCDS22670.1 GeneID:319518 MGI:2442188
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0004047 - aminomethyltransferase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006546 - glycine catabolism [Evidence IEA] codon_start : 1 product : pyruvate dehydrogenase phosphatase regulatory subunit protein_id : NP_938050.1

name	9430091E24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82918549 GeneID:434350 MGI:1924618
definition	codon_start : 1 product : hypothetical protein protein_id : XP_489247.3

name	Glg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677905 CCDS:CCDS22671.1 GeneID:20340 MGI:104967
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0017134 - fibroblast growth factor binding [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA] codon_start : 1 note : selectin, endothelial cell, ligand product : golgi apparatus protein 1 protein_id : NP_033175.1

name	Rfwd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542200 CCDS:CCDS22672.1 GeneID:234736 MGI:2384584
definition	GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ring finger and WD repeat domain 3 protein_id : NP_666330.2

name	Mlkl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626037 GeneID:74568 MGI:1921818
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : mixed lineage kinase domain-like protein_id : NP_083281.1

name	Fa2h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017399 CCDS:CCDS22674.1 GeneID:338521 MGI:2443327
definition	codon_start : 1 exception : mismatches in translation note : fatty acid hydroxylase domain containing 1 product : fatty acid 2-hydroxylase protein_id : NP_835187.1

name	Wdr59 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892721 CCDS:CCDS22675.1 GeneID:319481 MGI:2442115
definition	codon_start : 1 exception : mismatches in translation product : WD repeat domain 59 protein_id : NP_795897.1

name	Znrf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875354 CCDS:CCDS22676.1 GeneID:170737 MGI:2177308
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : peripheral nerve injury protein nin283; ring finger protein 42 product : zinc ring finger protein 1 protein_id : NP_573469.1

name	Ldhd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328379 CCDS:CCDS22677.1 GeneID:52815 MGI:106428
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO:0008720 - D-lactate dehydrogenase activity [Evidence NAS]; GO:0005515 - protein binding [Evidence IPI] [Evidence IDA] GO_process : GO:0006754 - ATP biosynthesis [Evidence NAS]; GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : D-lactate dehydrogenase protein_id : NP_081846.3

name	Zfp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83404683 CCDS:CCDS22678.1 GeneID:22640 MGI:99154
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : zinc finger protein 1 isoform 1 protein_id : NP_001032754.1

name	Zfp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83404685 GeneID:22640 MGI:99154
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : zinc finger protein 1 isoform 2 protein_id : NP_035872.2

name	Ctrb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385032 CCDS:CCDS22679.1 GeneID:66473 MGI:88559
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : chymotrypsinogen B1 protein_id : NP_079859.1

name	Bcar1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254593 GeneID:12927 MGI:108091
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005925 - focal adhesion [Evidence ISS] [Evidence IDA]; GO:0030027 - lamellipodium [Evidence IDA]; GO:0005624 - membrane fraction [Evidence ISS]; GO:0001726 - ruffle [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004871 - signal transducer activity [Evidence ISS] GO_process : GO:0007015 - actin filament organization [Evidence ISS]; GO:0050853 - B cell receptor signaling pathway [Evidence ISS]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0051301 - cell division [Evidence ISS]; GO:0016477 - cell migration [Evidence IDA] [Evidence ISS]; GO:0008283 - cell proliferation [Evidence ISS]; GO:0007173 - epidermal growth factor receptor signaling pathway [Evidence ISS]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IDA]; GO:0008286 - insulin receptor signaling pathway [Evidence ISS]; GO:0007229 - integrin-mediated signaling pathway [Evidence ISS]; GO:0048011 - nerve growth factor receptor signaling pathway [Evidence ISS]; GO:0048008 - platelet-derived growth factor receptor signaling pathway [Evidence ISS] [Evidence IDA]; GO:0030335 - positive regulation of cell migration [Evidence ISS]; GO:0042981 - regulation of apoptosis [Evidence ISS]; GO:0001558 - regulation of cell growth [Evidence ISS]; GO:0050852 - T cell receptor signaling pathway [Evidence ISS] codon_start : 1 note : v-crk-associated tyrosine kinase substrate; p130 Cas product : breast cancer anti-estrogen resistance 1 protein_id : NP_034084.2

name	Cfdp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753412 CCDS:CCDS22680.1 GeneID:23837 MGI:1344403
definition	GO_component : GO:0005604 - basement membrane [Evidence TAS] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0042127 - regulation of cell proliferation [Evidence IDA]; GO:0008360 - regulation of cell shape [Evidence IDA] codon_start : 1 product : craniofacial development protein 1 protein_id : NP_035931.1

name	Tmem170 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313306 CCDS:CCDS22681.1 GeneID:66817 MGI:106426
definition	codon_start : 1 product : hypothetical protein LOC66817 protein_id : NP_080057.1

name	Chst5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910284 CCDS:CCDS22682.1 GeneID:56773 MGI:1931825
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0031228 - intrinsic to Golgi membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0001517 - N-acetylglucosamine 6-O-sulfotransferase activity [Evidence IDA]; GO:0008146 - sulfotransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0018146 - keratan sulfate biosynthesis [Evidence IDA]; GO:0006044 - N-acetylglucosamine metabolism [Evidence IDA]; GO:0006790 - sulfur metabolism [Evidence IDA] codon_start : 1 note : I-GlcNAc6ST product : carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 protein_id : NP_064334.1

name	4932417I16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677480 GeneID:234740 MGI:2685024
definition	codon_start : 1 product : hypothetical protein LOC234740 protein_id : NP_001028493.1

name	Gabarapl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542873 GeneID:93739 MGI:1890602
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0000139 - Golgi membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence ISS] codon_start : 1 note : ganglioside expression factor 2; GABA(A) receptor-associated protein like 2 product : gamma-aminobutyric acid (GABA-A) receptor-associated protein-like 2 protein_id : NP_080969.2

name	Adat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304859 CCDS:CCDS22684.1 GeneID:30947 MGI:1353631
definition	GO_function : GO:0008251 - tRNA specific adenosine deaminase activity [Evidence ISS] codon_start : 1 note : adenosine deaminase tRNA-specific 1 product : adenosine deaminase, tRNA-specific 1 protein_id : NP_038953.1

name	Kars (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716381 GeneID:85305 MGI:1934754
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005739 - mitochondrion [Evidence ISS] GO_function : GO:0004824 - lysine-tRNA ligase activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0000049 - tRNA binding [Evidence ISS] GO_process : GO:0006430 - lysyl-tRNA aminoacylation [Evidence ISS]; GO:0008033 - tRNA processing [Evidence ISS] codon_start : 1 product : lysyl-tRNA synthetase protein_id : NP_444322.1

name	Terf2ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15618999 GeneID:57321 MGI:1929871
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043047 - single-stranded telomeric DNA binding [Evidence ISS] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IEA] codon_start : 1 product : telomeric repeat binding factor 2, interacting protein protein_id : NP_065609.1

name	EG627828 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82918359 GeneID:627828 MGI:3643578
definition	codon_start : 1 product : similar to heterogeneous nuclear ribonucleoprotein A3, isoform 1 protein_id : XP_900134.1

name	EG627828 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82918363 GeneID:627828 MGI:3643578
definition	codon_start : 1 product : similar to heterogeneous nuclear ribonucleoprotein A3, isoform 5 protein_id : XP_907560.1

name	LOC672498 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259098 GeneID:672498
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001480010.1

name	LOC672498 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259100 GeneID:672498
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001480015.1

name	LOC547023 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259094 GeneID:547023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 485 ESTs, 6 Proteins product : similar to ribosomal protein S27a pseudo : _no_value transcript_id : XR_034429.1

name	LOC100042040 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259043 GeneID:100042040
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 4 Proteins product : similar to 0610007P22Rik protein pseudo : _no_value transcript_id : XR_033230.1

clone name	MSMg01-527E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-213B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342B08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-165F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526P05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-365I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301A15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-370A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266B11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-413G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074K14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-055I05.T7 (MSMg01no055_i05.b1)	MSMg01-055I05.TJ (MSMg01no055_i05.g1)
ACC	AG283164	AG283165
length	958	737
length of high quality (start - end)	---	102 (87 - 188)
definition	CHROMAT_FILE: MSMg01no055_i05.b1 PHD_FILE: MSMg01no055_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:56 2005	CHROMAT_FILE: MSMg01no055_i05.g1 PHD_FILE: MSMg01no055_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:56 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCAAAAATTTTGTTTCCCTAAAACAACTCACTATATACAACGAAGACCCA GAGCAACATCTAGAGATCTCCGCCCAACTCAAATCACAGCAAGCTTAGAC TCCATCCTACGCCGCTTATATAGCTATACCGTTGCACCCCCGCTAACTTC TTGTTGTAGAACTAAATAGCATAATAAAAATAATCGCGTGATTATATATA ATCAATTTCACCTATCCATTATAACTTCTTAAAGATGTGCTTATTCTTTA TCCACCTCCCACTTCTTATATGTTANACTTAATAGTGCTGTTTTATCATA AAAATTATTATCTTCCATTAGTTTTATAATATCATCTGTAACACCAAATA TCTTTTGATATAACTAGCTAGTATGAATAATTACAAAATTTTTGAATACC AGTCGCTATCCCTACGTACTTCACATACACTATTTACTTAATAATCTCAA CTCCCCCGTCCCTTGCTCTCCCTCCGCTTCTGTACTCGTTCTTACGCAGC TACTTAATTTACTAGTCTTATACTTGTGTTTCTCGTACCATACCATAAAT TCATACAAGTGCGATAACATCCTTACTGCAATATGATCTTATGTACACAC TGACGCACCCCCTTAATGTACTAATCATCACGACTACCCTATGTAGTAGA CTAACAAACATACTAATTTTAGTTATGAATACATACANCCGACTGTCCAA CGTAAGAATACGTGATGACTAACTTAAAATTTATTCCATACATAATTTAG TCATCTTTGTCTTACTTTTCCACTATCTGTTGCTATGACACTTAATATAT GATATTACTCTACTGTATGTTATTGGCTATTGACTTACATATGCCCATTA GTAGTACAAGATATACTTACGCCCTAACGTGTCAGCTATTTCATACATGA TCCCTCCTTCCCTCTGANGCTGTGTTGTCCGTTGTGATGTATAATACATT GCACCCCG	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXACAGGCACCCAAGTCAAGAATGGCATATAATAATTGTGGAGGTA AATTGTGGGCACTTGCTTATATTTAACCACTTTCGATCTAAAGGTTTCAT GTGGTTCAATGTATTTACGATGTCCAAAACAGATGTCAGTTGTTTTGTGG TTAATTTGCAACCACCGCACCTCTCCCTGAGGCTTCCTCATGCAGTAATG CTGTAGTCTGTTTAACCACACCCTTCTGACTTAGTGTAGTATTGTTATTC CCTTGCTCTTCCGCGTGTGTCCTCTCTTTTTATGTTTCATGCTGACTATT CCTTCCTCGTCCACTGTTTTTTCCTCAGTATTCCTGCTTTCTTATTATCT ATCACCTTCGCCTTTGTATTTTTTTCTGTTATCTCTTCCTCTCTTCGCCC TTCTCCCTTTTGTTCGCTACTTTTCCCCTCTTTCCTTTTTCCCTCTCTCT CCAGTTTTCCTTCACCTCCCTCCACGTTTTTGATTTTTTTGCCTTTTTTC CTCCCTCACTCCCCTTTACTCTCTTTTTTTCCCCCTTTTTCCTCCTTTTT TCTCCTTGCTATCCTCCCCCCTTTGTTGTTTTTCTTCCTCTCTTGTACTC ACCCCTTCCACTTTCCTTTTCCCTTTTCCTTTCTTTCCATTTTCCTTTTT CCCTTTCCTATCCTATCCCTTTCCTTTTCCTTTTTTC
quality values	Open. Hide. 13 13 13 15 8 8 6 6 6 10 11 10 10 12 8 8 10 10 8 10 9 8 8 11 8 8 8 10 11 11 11 12 12 11 11 11 10 6 11 6 6 6 8 9 9 9 9 9 8 8 8 8 8 8 6 6 6 6 8 8 10 8 8 8 9 10 8 8 6 7 7 6 6 8 8 8 8 8 8 8 17 16 12 8 8 6 6 8 8 11 11 11 11 8 8 6 6 8 8 10 11 13 8 8 6 6 8 8 11 15 11 10 8 10 8 8 8 8 10 10 9 9 8 8 7 7 8 8 8 6 6 8 8 10 9 9 12 12 8 11 8 6 8 6 6 8 8 12 11 13 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 10 8 8 8 7 6 6 6 6 6 6 6 8 9 6 6 6 6 6 6 8 9 9 9 10 10 8 8 8 8 8 8 8 6 6 8 8 6 6 8 8 8 8 8 8 9 9 8 8 8 8 8 6 6 8 6 6 8 8 8 8 8 8 8 8 6 6 7 7 10 8 6 6 8 8 6 6 8 8 8 8 6 7 10 10 8 9 9 9 9 9 8 8 6 6 8 7 8 8 9 3 0 3 9 9 8 8 6 6 8 8 8 8 6 6 8 8 8 10 10 11 11 8 8 6 6 8 8 8 8 10 8 9 8 8 8 8 8 8 8 8 8 10 10 8 8 8 8 6 6 6 6 8 8 6 6 8 8 6 6 8 8 9 9 9 9 9 9 6 8 6 6 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 6 6 6 6 9 9 11 11 10 13 9 9 9 9 8 8 6 6 8 8 6 6 6 6 8 8 9 8 9 9 8 8 6 6 8 8 9 9 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 6 6 6 6 8 8 6 6 8 6 6 8 6 6 8 8 9 8 8 8 8 8 6 6 8 6 7 8 8 6 6 8 8 10 8 10 6 6 6 6 6 6 8 8 8 8 6 6 8 8 8 8 9 9 9 10 10 9 9 9 8 8 8 8 8 8 9 8 8 8 6 6 6 6 8 8 11 11 11 12 8 8 6 6 6 6 6 6 9 9 10 6 6 6 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 8 8 8 6 6 6 6 6 8 8 10 12 12 12 11 9 11 9 11 11 8 8 8 8 8 8 6 6 6 6 8 8 8 6 6 7 7 11 11 9 8 8 8 8 8 8 8 8 6 7 8 8 6 6 8 8 9 9 8 10 9 9 8 8 8 8 8 8 8 8 8 8 11 11 8 8 8 8 8 8 9 9 9 7 7 8 10 10 9 8 8 6 6 6 6 8 8 8 6 7 7 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 6 6 6 11 9 11 8 8 8 8 8 8 10 10 12 12 12 9 9 9 9 10 10 9 9 8 8 6 6 8 8 8 8 7 7 3 0 3 8 8 8 8 8 8 8 8 8 8 7 7 8 8 8 10 10 10 10 8 8 8 8 6 6 6 6 10 10 8 8 8 8 6 8 6 6 8 8 9 12 8 8 6 6 8 8 8 8 8 8 8 8 8 13 10 9 10 8 8 8 8 6 9 9 9 8 8 8 8 8 6 8 6 7 6 6 8 8 10 11 8 8 6 7 10 8 6 6 8 8 8 7 8 8 7 6 6 8 6 6 8 8 11 8 6 8 8 8 8 6 6 6 6 6 6 8 8 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 6 6 6 6 6 8 10 8 8 8 10 8 6 6 8 8 6 6 7 6 6 8 8 9 9 11 8 8 6 7 10 6 6 8 6 6 6 6 8 8 6 6 6 8 8 8 6 6 8 8 8 8 6 6 8 8 11 8 8 6 7 10 10 8 8 8 8 8 8 8 10 8 8 6 6 6 6 6 6 6 8 8 8 3 0 3 8 6 6 6 6 6 6 6 6 6 8 7 8 8 8 6 6 6 6 8 8 10 10 8 8 7 7 9 7 8 6 7 6 6 8 8 8 6 6	Open. Hide. 22 28 28 25 25 25 28 34 47 59 33 33 12 12 9 9 9 9 9 9 9 10 12 12 18 16 18 34 34 33 36 36 30 23 16 19 17 11 11 13 21 21 15 21 11 11 11 16 12 12 11 17 23 31 33 33 30 30 24 22 22 31 31 34 39 32 31 22 22 22 23 23 28 28 28 32 28 22 22 17 28 12 13 14 15 19 21 25 25 25 31 19 23 25 27 35 42 42 30 36 32 37 37 42 29 30 19 18 22 22 42 42 42 57 43 43 43 46 44 57 43 43 32 20 20 20 21 21 25 36 30 43 43 23 22 22 32 43 32 33 28 32 19 19 19 43 43 52 43 36 32 20 20 20 20 24 32 23 23 23 32 32 32 32 43 32 38 19 27 27 43 21 21 13 15 15 32 32 42 35 35 35 35 43 35 21 21 18 18 18 24 15 18 18 18 30 21 30 14 14 14 32 32 43 43 42 40 32 30 30 30 27 18 20 20 32 31 37 30 30 30 39 39 36 36 26 18 18 24 13 13 13 13 30 34 24 28 28 37 37 28 23 12 11 11 12 12 12 12 22 11 11 11 12 12 13 13 28 28 40 30 28 15 9 8 8 8 6 10 6 6 8 8 9 10 15 16 19 15 12 10 10 9 9 10 12 8 8 6 6 8 8 9 10 10 12 10 10 10 15 19 12 12 12 10 10 10 19 12 10 8 8 8 8 8 8 10 11 11 16 13 19 12 12 8 8 10 8 8 8 11 11 12 21 13 15 13 10 10 10 11 11 15 10 8 8 8 8 8 8 6 10 10 10 9 9 12 17 10 8 8 8 8 8 10 8 12 16 23 15 10 10 10 10 15 10 9 9 9 10 8 8 8 8 8 9 9 12 10 14 10 10 10 10 13 16 10 10 10 13 12 13 14 14 14 13 10 22 8 10 8 8 8 10 8 8 9 9 8 8 8 8 12 13 13 8 8 8 8 9 10 10 13 12 10 9 7 8 8 8 10 8 10 13 13 10 12 11 16 11 11 11 13 11 10 10 10 10 10 9 12 10 10 11 8 12 12 9 9 10 17 17 14 16 18 22 19 20 14 15 10 10 10 10 12 13 14 15 11 11 15 10 10 10 15 10 10 9 9 8 8 8 7 8 8 11 11 10 8 8 8 10 6 6 8 15 13 10 10 11 10 8 6 6 6 6 10 10 13 10 10 9 9 11 12 11 14 14 11 10 8 8 8 8 8 10 8 9 12 11 12 10 11 10 13 8 8 8 8 8 8 13 20 16 12 12 6 6 6 6 8 8 8 8 16 23 16 18 14 14 15 25 16 10 10 10 10 11 14 14 9 8 8 8 8 8 8 14 15 14 12 12 14 14 10 10 9 9 11 9 9 9 8 8 6 6 8 8 9 15 19 16 15 13 8 8 6 6 8 8 9 8 14 14 14 12 10 12 10 8 8 8 10 6 6 6 8 8 12 8 6 6 8 8 9 11 12 11 10 10 10 13 10 9 9 8 12 8 12 9 9 12 7 6 8 8 10 10 11 8 8 7 7 7 10 10 10 8 8 8 8 8 32 15 15 18 16 12 12 10 10 11 11 11 14 17 17 8 8 6 8 11 11 12 10 8 8 8 10 18 19 10 10 10 15 17 12 10 10 10 12 12 10 11 11 7 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no055_i05.g1 MSMg01no055_i05.g1 CHROMAT_FILE:
MSMg01no055_i05.g1 PHD_FILE: MSMg01no055_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:56 2005
         (102 letters)



>mm_chr8_113997700_113998201
          Length = 502

 Score =  197 bits (102), Expect = 1e-55
 Identities = 102/102 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taattgtggaggtaaattgtgggcacttgcttatatttaaccactttcgatctaaaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taattgtggaggtaaattgtgggcacttgcttatatttaaccactttcgatctaaaggtt 243

                                                     
Query: 61  tcatgtggttcaatgtatttacgatgtccaaaacagatgtca 102
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcatgtggttcaatgtatttacgatgtccaaaacagatgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information