CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAANGGATCCGCGGA
ATTCTTTAATAGCTGTAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTTTGTGTATCCCCCAAAAACCTCTATTTTCCATTTCTCTTTT
TAAAAGTCGCCATGATAATACATTTATTGTCCAAAACATCACCTAGAAAA
TTTGTTTGGCTCATCTCTTAAATGTGCAAACCTGATACCTGAGTAATCTT
CTTGTCTTCTGAAGGACCTTATCTTCTGGACAAAGAATGCTCCGCACCAA
TACAAACCCACCCTTTTTTTTATATTATCCCTTGATATTCTTCATATTAA
TGAGTTCTTTCACACACCCTCCATATACTCTATTCATGATAACAAAGATT
ATCATGACTTCCCTACATAGCCCAATAATGATCACCTCTATTCTTTTTTT
CTATTAACACTTCATACACTACTTCAAAATCAGAATGAACATAAAATATC
TTTAGTAAATCGCCCTTCTGAAACTCTTCATCCATTGTCTTTGAACATCC
CTATATGTCCGAATCCTTTCCTAAATTCTACATTACTATATTATAACCCC
CCAACATTATTATTATCCCCTTTTGCCACTTCATATAAACCCCTTTCCTA
GCCAAATTTGTACAGTCACTCGTAAAAATACCACAATCTATATTATCCCC
CCTTACATCTTACACTCTTTACCCCGCCATTTTTTATATCACCCCCTTAC
ACACAATTAGCCACCACCCCTACCG

ATGATGTGGGAGGCCTGGCGGCCGCCTGGTTCTGACGAGGAGGTGACCTA
TAGAAGTACCAGCAGAAATCAATATCTGTTGGGCATGGTGGTGCAGGACT
TTAATCCCAGCACTCACGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGG
CCAGCTTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCCATACAGAGA
AACCTTGTCTCAAAAAACAAACAAACAAAACAAACAAACAAACAAAACAA
CAACAAAAAGAATTTAAGTAAAAGTTTAAGATAGCAAACATTTAGGATTT
AATGAACAAAATTTTTTCGTTTCATAATAGTGAAATTTAAAACAACTTCA
ATATAGTAGATTTTATTTTTATATTATATTAAATTTTATTATTTTATTAT
ATTATTTAGCAGTATGGTATTATTTAGCAGTATGGTATATGATTGCATTA
ACAAATTCTCAACACACACACACACACACACACACACACACATATATATA
TATATATATTACAAAAAAATCCTAATAAATGTGATATTTTCTAAAAGGCC
AAACTGGATCTTTATAAAATACAAAAGACAGAAGAGAAATCTGTAGAACA
AGGAATCTTTTAGAGAAGAAAGTTCAAGTATTTGTTTATGAGCATACTAT
TGCTTTATTATGGAGTTCATAATCTATATAAATAAACTAGACACCTGCAT
GT

Query= MSMg01no056_g13.g1 MSMg01no056_g13.g1 CHROMAT_FILE:
MSMg01no056_g13.g1 PHD_FILE: MSMg01no056_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:04 2005
         (543 letters)



>mm_chr8_50996446_50997388
          Length = 943

 Score =  835 bits (432), Expect = 0.0
 Identities = 508/550 (92%), Gaps = 33/550 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatctgttgggcatggtggtgcaggactttaatcccagcactcacgaggcagaggcag 60
           |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 689 aatatctgttgggcgtggtggtgcaggactttaatcccagcactcaggaggcagaggcag 630

                                                                       
Query: 61  gcagatttctgagttcaaggccagcttggtctacaaagtgagttccaggacagccagggc 120
           ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 629 gcaaatttctgagttcaaggctagcctggtctacaaagtgagttccaggacagccagggc 570

                                                                       
Query: 121 catacagagaaaccttgtctcaaaaaacaaacaaacaaaacaaacaaacaaacaaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 catacagagaaaccttgtctcaaaaaacaaacaaacaaaacaaacaaacaaacaaaacaa 510

                                                                       
Query: 181 caacaa---aaagaatttaagtaaaagtttaagatagcaaacatttaggatttaatgaac 237
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 caacaacaaaaagaatttaagtaaaagtttaagatagcaaacatttaggatttaatgaac 450

                                                                       
Query: 238 aaaatt--ttttcgt--ttcataatagtgaaatttaaaacaacttcaatatagtagattt 293
           ||||||  |    ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaaattaat----gtgcttcataatagtgaaatttaaaacaacttcaatatagtagattt 394

                                                                       
Query: 294 tatttttatattatattaaattttattattttattatattatttagcagtatggtattat 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 393 tatttttatattatattaaattttattattttattatattatttagcagtatggtat--- 337

                                                                       
Query: 354 ttagcagtatggtatatgattgcattaacaaattctcaacacacacacacacacacacac 413
                          |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 336 ---------------atgattgcattaacaaattctcaatacacacacacacacacacac 292

                                                                       
Query: 414 acacacacatatatatatatatatattacaaaaaaatcctaataaatgtgatattttcta 473
           |||||||  ||||||||||||| | ||||||||||||||||||||||||||| |||| ||
Sbjct: 291 acacaca--tatatatatatat-t-ttacaaaaaaatcctaataaatgtgatgttttgta 236

                                                                       
Query: 474 aaaggccaaactggatctttataaaatacaaaagacagaagagaaatctgtagaacaagg 533
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aaaggccaaactggacctttataaaatacaaaagacagaagagaaatctgtagaacaagg 176

                     
Query: 534 aatcttttag 543
           ||||||||||
Sbjct: 175 aatcttttag 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)