BAC Information

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BAC

Clone NameMSMg01-056J19
Chromosome8 (Build37)
Map Location 84,324,701 - 84,324,999
singlet/doubletsinglet
Overlap geneInpp4b
Upstream geneGab1, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056J19.T7 (MSMg01no056_j19.b1)MSMg01-056J19.TJ (MSMg01no056_j19.g1)
ACCAG283979AG283980
length718718
length of high quality
(start - end)
300 (70 - 369)298 (70 - 367)
definitionCHROMAT_FILE: MSMg01no056_j19.b1 PHD_FILE: MSMg01no056_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:19 2005CHROMAT_FILE: MSMg01no056_j19.g1 PHD_FILE: MSMg01no056_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGACAATTTACATTCAGACATGTGAGGTTGGTGGGAACTGGCTTACCAG
TTCTGATTCCAGTATGACCTGGGGTTATCAGTAATGTATATGATCCTTTG
CCAAGTGCTTAGCTCACAATCATACATCCCTATTTTTCTTGCCATATCCA
TGATGACAGTGTGAGGGGAGGTACTGTGATCATAGTTCCCTACTTGACAA
AAGAGAAACCTGAGCATGGTACCATTCAGTGAGAAGCTAATGTTGCATGA
CTAATTTTTATGAGTCAAGGTTTCCCTTGAAGCCTTGCTCCAAAACCTAT
TTTTTAACTATTGTTCTTCACTGCTTCCTGAAGTAATGTCAGAAGGACTA
TTGAAGCTATAATATCAGTGGTTATTTCTAAGTGCAGTGCATGATATGCA
CATGGGGTAAAGGCGTGACAATCCCAGCCATTCATCATTGTATAAGTTCC
TCCATAGGACAGAATTCTTTTGTAATGGTTTCTGAACTGATTTTCACAAT
TCCAGCCAGATGAACCATTGCAGTGAAAAGGTCAGAATGTCCATTAGACA
TGTGTGTTATCTGAAAAGACTAGATTACTTCCTAACTTGATTGTTCCAGC
TAATGACGGCTTTTCCAATGCCTGTACCACAGCCCTTCTGAGTATTGTTC
ATTGAGACATAACAACTT
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATCAGGCCTTCAAAGAAGACCTAATACCAG
TACTCCTCAAACTGTTCCATCAAATAGAAACAGAAGGAATACCATCCACT
TCTTTCTATGAAGCCACAGTTACCCTGGTACCTAAATCATAAAAGACCAA
ACAAAGAAAGAGAACTCAGACCAATTTCCCTTATAAATATCAATGCAAAA
ATACTCAATAAAATTCTTGCAAAATGAATCCAAGAATACATCAAAATGAT
CATCTTTGATAATCAAATATACATCAACCCAGGGATGCAGAGATGGTTCA
TAGTATGGAAATTTATCACCGCCCCTCCACTATATAAACATACTTAAAGA
AAAAAACACATGAACATCTCATCAGATGCAGAAAAAGCCTTTGACAAAAT
ACAACACCCATTCATGTTAAAAGTATTGGAGACATCAGGAAATTAAGCTG
TATACCTAAATATAATAAAAGCAATATACAGCAAACGAATAACCAACATT
AAACTAAATGGGCAAAACTCACAACAATCCTATTAAAATCAGGGAAAGAC
AAGGCTGCCCATTCTCTCCCAACCTATTCAATATAGTACTTAAAGTTCTA
GCAATTAGACAACTAAAAGAGACCAAAGGTATACTAATTGGAAGGGAGGA
AGTCAAGATATCACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_j19.b1 MSMg01no056_j19.b1 CHROMAT_FILE:
MSMg01no056_j19.b1 PHD_FILE: MSMg01no056_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:19 2005
         (300 letters)



>mm_chr8_84324501_84325200
          Length = 700

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgaggttggtgggaactggcttaccagttctgattccagtatgacctggggttatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catgtgaggttggtgggaactggcttaccagttctgattccagtatgagctggggttatc 260

                                                                       
Query: 61  agtaatgtatatgatcctttgccaagtgcttagctcacaatcatacatccctatttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaatgtatatgatcctttgccaagtgcttagctcacaatcatacatccctatttttct 320

                                                                       
Query: 121 tgccatatccatgatgacagtgtgaggggaggtactgtgatcatagttccctacttgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccatatccatgatgacagtgtgaggggaggtactgtgatcatagttccctacttgaca 380

                                                                       
Query: 181 aaagagaaacctgagcatggtaccattcagtgagaagctaatgttgcatgactaattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagagaaacctgagcatggtaccattcagtgagaagctaatgttgcatgactaattttt 440

                                                                      
Query: 241 atgagtcaaggtttcccttgaagccttgctccaaaacctattttttaactattgttctt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 atgagtcaaggtttcccttgaagccttgctccaaaacctattttttaaccattgttctt 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)