Query= MSMg01no056_p15.b1 MSMg01no056_p15.b1 CHROMAT_FILE:
MSMg01no056_p15.b1 PHD_FILE: MSMg01no056_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:46 2005
(586 letters)
>mm_chr8_67101677_67102662
Length = 986
Score = 969 bits (501), Expect = 0.0
Identities = 565/587 (96%), Gaps = 4/587 (0%)
Strand = Plus / Minus
Query: 2 ggaattcttatttgttaccttatttgcttctcagtttcttgtcgtcccagaggatttata 61
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ggaattcttatttgctattttatttgcttctcagtttcttgtcgtcccagaggatttata 727
Query: 62 tgcaatccaacaaatattatctttaattgtcgtgactccatctcctatgtcacatcagcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tgcaatccaacaaatattatctttaattgtcgtgactccatctcctatgtcacatcagcc 667
Query: 122 tcctgaaaagaa-taacttttcatattctggagctagcactgtgtaactgcccaatttct 180
|||||||||||| || |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 666 tcctgaaaagaattagcttttcatattctggagctagcaccgtgtaacggcccaatttct 607
Query: 181 ctctgaggtcagggataactttccttattttgtcctgtcacaattaccttgatttttaaa 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 606 ctctgaggtcagggataactttccttattttgtgctgtcacaattaccttgatttttaaa 547
Query: 241 tttcaatatattagtacattcattataatgacatatgttgtctcatgtttacccaaagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tttcaatatattagtacattcattataatgacatatgttgtctcatgtttacccaaagaa 487
Query: 301 tgttttgttttttgttttttaaatctactcataagtatagtaaacatattttcgatagag 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 486 tgttttgttttttgttttttaaatctactcataagtatagtaaac--attttcggtagag 429
Query: 361 ttgctatgaaagaaatttcctgcacaggcaaaacccagaaacaatcatgaaatatttttg 420
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 428 ttgctatgaaagaaatttcctgcacaggcaaaccccagaaactatcatgaaatatttttg 369
Query: 421 accaagctatctggagt-ccaagcaagcgtggcataggaaacattgacaccgtctcacag 479
||||||||||||||||| |||||||| |||||||||| |||| ||||||| ||||||||
Sbjct: 368 accaagctatctggagtcccaagcaaatgtggcatagggaacagtgacaccatctcacag 309
Query: 480 tgtgctgggtggagggaccacagtgcccacccaagcacactgtgagatggtttctcacct 539
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 308 tgtgctgggtggggggaccacagtgcccacccaagcacactgtgacatggtttctcacct 249
Query: 540 ttatttgcatgcaacttcgtttcccttttcctctttctccatcctct 586
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 248 ttatttgcatgcaacttcgtctcccttttcctctttctccatcctct 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_p15.g1 MSMg01no056_p15.g1 CHROMAT_FILE:
MSMg01no056_p15.g1 PHD_FILE: MSMg01no056_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:46 2005
(301 letters)
>mm_chr8_66932043_66932743
Length = 701
Score = 567 bits (293), Expect = e-166
Identities = 299/301 (99%)
Strand = Plus / Plus
Query: 1 tctagcagtacttcatgagactatatactgctgacttggtttatttggacatcaactcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tctagcagtacttcatgagactatatactgctgacttggtttatttggacatcgactcca 260
Query: 61 ctgggttaagaaatgcctaaggctttaataaacaaggcaaatttctagatatgcccataa 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgggttaagaaatgcctaaggctttaataaacaaggcaaatttctagatatgcccataa 320
Query: 121 gggtctttctagcaaatgacagagttgggacttggacttggatgaagtaaaagtaggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtctttctagcaaatgacagagttgggacttggacttggatgaagtaaaagtaggaaa 380
Query: 181 tgaaaaacctggacatatatccagaagatgttccaactggtaataagaacacatgctcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaaacctggacatatatccagaagatgttccaactggtaataagaacacatgctcca 440
Query: 241 ctatgttcatagcaaccttatttataatagccagaagctggaaagaacccagatgtccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgttcatagcaaccttatttataatagccagaagctggaaagaacccagatgtccct 500
Query: 301 c 301
|
Sbjct: 501 c 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
