BAC Information

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BAC

Clone NameMSMg01-057D23
Chromosome8 (Build37)
Map Location 111,503,267 - 111,503,763
singlet/doubletsinglet
Overlap genenone
Upstream geneAtbf1
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057D23.T7 (MSMg01no057_d23.b1)MSMg01-057D23.TJ (MSMg01no057_d23.g1)
ACCAG284452AG284453
length722728
length of high quality
(start - end)
493 (38 - 530)345 (67 - 411)
definitionCHROMAT_FILE: MSMg01no057_d23.b1 PHD_FILE: MSMg01no057_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:08 2005CHROMAT_FILE: MSMg01no057_d23.g1 PHD_FILE: MSMg01no057_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTAAACGACTCCTATATTCAGAGAATCCGCGGAATTCTTTA
GCTACTTCTTTTTCTAGGGGGTGTTGTGTGTATTGTGAAATAGTCATAAA
ACCAAAACTCACATGGTCATTATCTCCTAGAAAAGGAGAGAATGAGAAGA
ATAGAATTGCTAACAGTGTGATGGAAACGTTGTGTATTCTTTGTTTTTGA
ACCAGTGTTCTCTGATCACTTCACATTCTATATCTAAGCATAGGGGTACT
GACTGTACAAAGCTCTGGACCCAGAAAAACACCTTTTTTTTTTTTTTTTT
TTGGGTTTTCCAGACAGGGTTTCTCTGTATAGCCCTGGCTATCCTGGAAC
TCACTCTGTAGACCAGGTTGACCTTGAACTCAGAAATCCACCTGCCTCTG
CCTCCCAAGCGCCGCGATTAAAGGTGTGCACCACCACTGCCTGGCAGAAA
AACACTTCTAGAACAGCCCCCATCTCCCATCTTCCCAAGGCCATGAGAGA
GGGTTGGAACAAAAATACAGGTATGTACCAACATGAACATTGAAGAATAG
TAAGACTTGACTAGTCCCTGAAAGCATAGTTTTCAGACAGGATTAAAAAG
CTGGGTAAGAATAAGGTGATAAGAAAGTGTCATATGTTAAGAAGGAGATT
CATAGCCATGAAAGGCTTTAAGAAAATGCCAAGTATATGTTAGCTTAAAA
TACATAAGATTGTACCTCTAAT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGGGCATGTGGACTTCTTTTGTTAGTTCTAGGCA
TGGTATGGACAAAACAGGCAGAGTAGCAGAAAGGATGTGTGGAGATGGTC
CTAGAGGTTGGTGTATTTGGGGAGGAATGATGTCCAGCGAGCAGAGGGGA
CTGGGCTGGTATACAGGATACGCCTCCTTGTCCAAGCCTGGAATATGGGG
GTGGATCTGGCAGGGTGCAAGGGTTGGATGTAACATGAGAGAGGCCTGTG
TATTGTGGCTGGAGGGACTAGGCAGGGCTGCAGAAGCCTAGATATTGGTG
TTGGCACAAACAAGGGATAGCCAGATTAGGCTTAAGCACTCAACATGGGA
TTGGCTGGGGCCCGAGCGCAAGGGGAAAAGGTCAAGTTGACTCATCAGAT
TAGACCCTGGAGAAGGATATGAGAGGTCTGGCTGGTTGGAAAGAATGGAT
GGGATGCAGGTGGCTGGTATACCTGTGGGTGGTGGCAGGTAGGATGGGTC
CTGACATAATCCTCAATATTATTCTACAATTTGGAAAACTTGCTCTTTAG
TAACAGGTTTGGTAGGTTTAAGGTGCTCCTCAGTGGCTACAAATTTTACC
TTGTGCCTCTTAGGACCTATTTTAGTTTTCCTACTCCTTTCCCCCCTATC
GCATTCCTTTACTCCTTTCCCCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_d23.b1 MSMg01no057_d23.b1 CHROMAT_FILE:
MSMg01no057_d23.b1 PHD_FILE: MSMg01no057_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:08 2005
         (493 letters)



>mm_chr8_111503064_111503956
          Length = 893

 Score =  876 bits (453), Expect = 0.0
 Identities = 483/497 (97%), Gaps = 7/497 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttagctacttctttttctagggggtgttgtgtgtattgtgaaatagtcataaa 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttagctacttttttttctagggggtgttgtgtgtattgtgaaatagtcataaa 263

                                                                       
Query: 64  accaaaactcacatggtcattatctcctagaaaaggagagaatgagaagaatagaattgc 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accaaaactcacatgatcattatctcctagaaaaggagagaatgagaagaatagaattgc 323

                                                                       
Query: 124 taacagtgtgatggaaacgttgtgtattctttgtttttgaaccagtgttctctgatcact 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 taacagtgtgatggaaacgttgtatattctttgtttttgaaccagtgttctctgatcact 383

                                                                       
Query: 184 tcacattctatatctaagcataggggtactgactgtacaaagctctggacccagaaaaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcacattctatatctaagcataggggtactgactgtacaaagctctggacccagaaaaac 443

                                                                       
Query: 244 accttttttttttttttttttt-------gggttttccagacagggtttctctgtatagc 296
           ||||||||||||||||||||||       || ||||||||||||||||||||||||||||
Sbjct: 444 accttttttttttttttttttttttttttggtttttccagacagggtttctctgtatagc 503

                                                                       
Query: 297 cctggctatcctggaactcactctgtagaccaggttgaccttgaactcagaaatccacct 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctggctatcctggaactcactctgtagaccaggttgaccttgaactcagaaatccacct 563

                                                                       
Query: 357 gcctctgcctcccaagcgccgcgattaaaggtgtgcaccaccactgcctggcagaaaaac 416
           |||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcctctgcctcccaagtgctgggattaaaggtgtgcaccaccactgcctggcagaaaaac 623

                                                                       
Query: 417 acttctagaacagcccccatctcccatcttcccaaggccatgagagagggttggaacaaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acttctagaacagcccccatctcccatcttcccaaggccatgagagagggttggaacaaa 683

                            
Query: 477 aatacaggtatgtacca 493
           |||||||||||||||||
Sbjct: 684 aatacaggtatgtacca 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)