CTCCTATATTCAGAGAATCCGCGGAATTCTCTTCTGTATCCTCTATAGTT
CTTGTCTTCAACTGACTTCACGAGACACATCAGTTTTCAAACGGGAATCA
AAGTTGATTAGTGGCTCACCCCTAGCACCAACAGAGCATCTTTTATTCTT
AACAAAAAGTTCAACAGGAATACCAGAGTTCATGAAGAAGACCCAGTAAG
CTTTCTGTATCCTGCTTTGTTTTCTGTTGGCTGTTGTACCTATTTGATCA
ACCATTTATAATGTGTCAATGAAAACCTTTGTAAATTTTGATTGACAAAT
ACAGTTTTAAAGTGTCCCTCTCTAAGTATGTCCGTGTGTTTGCATATTGA
AGTAAGTTTTTCCTGTGGTTTCCAGGAATAAGCCTGAAATATTTGCTAAC
AAAATGGAAGAAAGTGGAACTACGGGATGTAGCTGCAGGTTACTAAAACT
GCACATACATGACTGCAGATAGTGGGGACTCTATGAGTGCTTCTCTGCCA
GTTTTGTCTAACTCTTAGCAAATAAAAAAATATTATCCACCATCTAGAGA
GATGGCTCAGTGTTTAATAGCGCTGGCTGCTGTTCCAGAAGTCCTGAGTT
CAATTCCCAGTACCCACATGTTGGCTCACAACCGTGTGATCTGATGCCTT
CTTCTGG

TTTTTTTTTTTNNNTNTTTNNNNNTNTNNTCTTCNTTTTTTTTTTTTTTC
CCCCCCNNCCCCNTCTTCTCCTCNTCTATGATATGAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XACTGATACTTTTAAGCGTTCTTGGACAGAGAGAACAAAACACATCACTA
ACAGTTATTTTTCATTGTTTTAACTTAAAAAAAAATACATATCCTTCTGT
AAAAACTCTGTTCTTCCCACAGAGGCAACATTCCCTAAAATGGAGATTAA
TAAGCTACTAATAGCTCAGACTTAACTCAATAATTGCAAATATGCTAGTA
TAATATCTTGATAAATATAAGAATTTTGAGAGCCAAAAAATTAAAGACTT
TGATATGTGTAAGATCAATAGACATGACTTATCACTATTTAATATCAGTT
TTAATTTTTAAATGCCATGTTCCAGCGAAAAAGTTTACTGCACAGGAAAA
TTGAAATTCCAAGAAAGAATCCAGACAAAAGAAACAAACTTTATATTAAA
GTGCCTTTAAGAGGCCACACTTACGCAGCCACCTCTTCTTTCGACAGCCC
TTTGAAATTCTGTTCCAGGTAATAATCCATGTCCTCTTTCTCTTTGATCA
ACTGGGCCCTAAGTGGAGTAAAAAGAAAATAATTTAGTACCTGTCTGACC
AAGCTTGAAAAAGTTTCCGAACACACGAGTGCTACCAGAAAAAGATAACC
CCTCCCGGTAAACAAG

Query= MSMg01no057_m08.b1 MSMg01no057_m08.b1 CHROMAT_FILE:
MSMg01no057_m08.b1 PHD_FILE: MSMg01no057_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:50 2005
         (502 letters)



>mm_chr8_80647174_80648075
          Length = 902

 Score =  888 bits (459), Expect = 0.0
 Identities = 489/499 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctcttctgtatcctctatagttcttgtcttcaactgacttcacgagacacatcag 63
           ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcttctgcatcttctgtagttcttgtcttcaactgacttcacgagacacatcag 263

                                                                       
Query: 64  ttttcaaacgggaatcaaagttgattagtggctcacccctagcaccaacagagcatcttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 ttttcaaacgggaatcaaagttgattagtggctcacccctagcaccaacagagcatcctt 323

                                                                       
Query: 124 tattcttaacaaaaagttcaacaggaataccagagttcatgaagaagacccagtaagctt 183
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttcttaacaaaaggttcaacaggaataccagagttcatgaagaagacccagtaagctt 383

                                                                       
Query: 184 tctgtatcctgctttgttttctgttggctgttgtacctatttgatcaaccatttataatg 243
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 tctgtatcctgctttgttttctgttggctgttgtacctacttgatcaaccatttataatg 443

                                                                       
Query: 244 tgtcaatgaaaacctttgtaaattttgattgacaaatacagttttaaagtgtccctctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtcaatgaaaacctttgtaaattttgattgacaaatacagttttaaagtgtccctctct 503

                                                                       
Query: 304 aagtatgtccgtgtgtttgcatattgaagtaagtttttcctgtggtttccaggaataagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagtatgtccgtgtgtttgcatattgaagtaagtttttcctgtggtttccaggaataagc 563

                                                                       
Query: 364 ctgaaatatttgctaacaaaatggaagaaagtggaactacgggatgtagctgcaggttac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgaaatatttgctaacaaaatggaagaaagtggaactacgggatgtagctgcaggttac 623

                                                                       
Query: 424 taaaactgcacatacatgactgcagatagtggggactctatgagtgcttctctgccagtt 483
           | || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 tgaagctgcacatacatgactgcagacagtggggactctatgagtgcttctctgccagtt 683

                              
Query: 484 ttgtctaactcttagcaaa 502
           |||||||||||||||||||
Sbjct: 684 ttgtctaactcttagcaaa 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no057_m08.g1 MSMg01no057_m08.g1 CHROMAT_FILE:
MSMg01no057_m08.g1 PHD_FILE: MSMg01no057_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:50 2005
         (414 letters)



>mm_chr8_80744542_80745355
          Length = 814

 Score =  754 bits (390), Expect = 0.0
 Identities = 408/414 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgatacttttaagcgttcttggacagagagaacaaaacacatcactaacagttatttt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 actgatacctttaagcgttcttggacagagagaacaaaacacatcactaacagttatttt 555

                                                                       
Query: 61  tcattgttttaacttaaaaaaaaatacatatccttctgtaaaaactctgttcttcccaca 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 554 tcattgttttaacttaaaaaaatatacatatccttctgtaaaaactctgtttttcccaca 495

                                                                       
Query: 121 gaggcaacattccctaaaatggagattaataagctactaatagctcagacttaactcaat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaggcaaccttccctaaaatggagattaataagctactaatagctcagacttaactcaat 435

                                                                       
Query: 181 aattgcaaatatgctagtataatatcttgataaatataagaattttgagagccaaaaaat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 434 aattgcaaatatgctagtataatatcttgataaatataagaattttgagagccaaaaatt 375

                                                                       
Query: 241 taaagactttgatatgtgtaagatcaatagacatgacttatcactatttaatatcagttt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 taaagactttgatgtgtgtaagatcaatagacatgacttatcactatttaatatcagttt 315

                                                                       
Query: 301 taatttttaaatgccatgttccagcgaaaaagtttactgcacaggaaaattgaaattcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 taatttttaaatgccatgttccagcgaaaaagtttactgcacaggaaaattgaaattcca 255

                                                                 
Query: 361 agaaagaatccagacaaaagaaacaaactttatattaaagtgcctttaagaggc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agaaagaatccagacaaaagaaacaaactttatattaaagtgcctttaagaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)