ACTXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGCGGAA
TTCAGCCTGTCCGTAAGCGCCTTTACCTGCTGTGCCATCTTGGAGGCTGG
TAACATCACATCTCAGGGTGTTTTGTGTGTGAAGAGTTGTAGAAGTGAGT
CCATATCAACACCTGGAAGCAGGGGTGTGGAGGTGGCATTTCATGACACT
GAGGTCTTGTTGCATAAATGTGGATACACAGACCAAACCCTTCCCTTGCA
GACCAGAGCCGCAATGCCCCCGCTTGATAACTTCTACACTCCACTCTTGA
GAGTAAGCACTGCTTTCATAGGCTAGATGCTAGGTCTGGCTTGTCTTCCT
ATTCACATGGTGCCTGGGGGCAGCAAGCATGGGGTCGGCACACAGAAACC
CTCCCCAACTTCACCTTCAAACTATGGTCTGTAGAGCAGTGTTCTGGTAT
CTCGAGGAAGTTTGTCAGGGATGCAGAGGCAGAAGCGTCACAATGACACA
CCCAGGGAGGACCTGTATTGTGCTCACATCCTGGAGTTCGAGCCTCACTT
CCTCAAATGACAACTAAATTTCCCCAGGGTTACCTCTTCTCTGTCTTTGC
TTCCTGACCAGACTGTAGATGATGAGATGCCTAGCAGGTTTGGGGCACAC
ACGTCCAGTGTACTGCTCTTATGTTCGTGTTTGCCGATCTCATTATTGGC
CAGGC

ATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGGACTTCATCTTGATTTCCAGACAGGC
TAAGGGAACTCAGTCTGCTGCTAACAGAGACTATCTGCCCAAAGACACAC
CAGCCTGGGTTGATTCCTAGTGTCCCTTCCTTAGTCTCTGTATTGATGCC
CCTAAGGTTTAAAGCAACCTGTGCTTAGAGAAGTTCACTGGCCATGGAGT
TCCATGTAGATGTTCTTCCTTAATTTACAGAGTGGTATTTTACAAATAAA
AATGAGGAGTTCTTATTGTCTAAAAAATCAACAGAGAGGGGGGGCTAGGG
AGATGGCTGGCTATGGACAGTCTCCAAAGTGTGAGTCCCCAGCACCCACA
TAAAAGTTGCCCGCAGTCATACTGCCAGTCACCCCAGTACTGGGGGAGTA
GAGACATGCAGACAGACCCTCGGGACATGCTGGCAAAGCAGCCCAGCTGA
ACTCTGAGCCCTAAGTTTAATAAAAGATTCAGTCTCAAAAAAATAATGTT
TAGCAATTGATCACTACACACACACACTCATACTCAGAGAGAGAGAGACA
GAGACAGAGACTGAGACTCCGAGAGACACTGATAGAGACTTTCAGAGATT
GAGAGATTGAGACAGACATTCCCACCCTCACACACTCACATTGAGTGAGA
TATAA

Query= MSMg01no057_o09.b1 MSMg01no057_o09.b1 CHROMAT_FILE:
MSMg01no057_o09.b1 PHD_FILE: MSMg01no057_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:00 2005
         (567 letters)



>mm_chr8_11067373_11068339
          Length = 967

 Score = 1044 bits (540), Expect = 0.0
 Identities = 555/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcagcctgtccgtaagcgcctttacctgctgtgccatcttggaggctggtaacatc 67
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gaattcagcctgtcagtaagcgcctttacctgctgtgccatcttggaggctggtaacatc 708

                                                                       
Query: 68  acatctcagggtgttttgtgtgtgaagagttgtagaagtgagtccatatcaacacctgga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acatctcagggtgttttgtgtgtgaagagttgtagaagtgagtccatatcaacacctgga 648

                                                                       
Query: 128 agcaggggtgtggaggtggcatttcatgacactgaggtcttgttgcataaatgtggatac 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agcaggggtgtggaggtggcatttcatgacactgaggtcttgttgcataaatgtggatac 588

                                                                       
Query: 188 acagaccaaacccttcccttgcagaccagagccgcaatgcccccgcttgataacttctac 247
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 587 acagaccaaacccttcccttgcagaccagagccgcaatgcccctgcttgataacttctac 528

                                                                       
Query: 248 actccactcttgagagtaagcactgctttcataggctagatgctaggtctggcttgtctt 307
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 527 actccactcttgagagtaagcactgctttcagaggctagatgctaggtctggcttgtctt 468

                                                                       
Query: 308 cctattcacatggtgcctgggggcagcaagcatggggtcggcacacagaaaccctcccca 367
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cctactcacatggtgcctgggggcagcaagcatggggtcggcacacagaaaccctcccca 408

                                                                       
Query: 368 acttcaccttcaaactatggtctgtagagcagtgttctggtatctcgaggaagtttgtca 427
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 actttaccttcaaactatggtctgtagagcagtgttctggtatctcgaggaagtttgtca 348

                                                                       
Query: 428 gggatgcagaggcagaagcgtcacaatgacacacccagggaggacctgtattgtgctcac 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gggatgcagaggcagaagcgtcacaatgacacacccagggaggacctgtattgtgctcac 288

                                                                       
Query: 488 atcctggagttcgagcctcacttcctcaaatgacaactaaatttccccagggttacctct 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atcctggagttcgagcctcacttcctcaaatgacaactaaatttccccagggttacctct 228

                               
Query: 548 tctctgtctttgcttcctga 567
           ||||||||||||||||||||
Sbjct: 227 tctctgtctttgcttcctga 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no057_o09.g1 MSMg01no057_o09.g1 CHROMAT_FILE:
MSMg01no057_o09.g1 PHD_FILE: MSMg01no057_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:00 2005
         (482 letters)



>mm_chr8_10976643_10977524
          Length = 882

 Score =  870 bits (450), Expect = 0.0
 Identities = 474/482 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggacttcatcttgatttccagacaggctaagggaactcagtctgctgctaacagaga 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggacttcatcttgacttccagacaggctaagggaactcagtctgctgctaacagaga 260

                                                                       
Query: 61  ctatctgcccaaagacacaccagcctgggttgattcctagtgtcccttccttagtctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatctgcccaaagacacaccagcctgggttgattcctagtgtcccttccttagtctctg 320

                                                                       
Query: 121 tattgatgcccctaaggtttaaagcaacctgtgcttagagaagttcactggccatggagt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgatgcccctaagatttaaagcaacctgtgcttagagaagttcactggccatggagt 380

                                                                       
Query: 181 tccatgtagatgttcttccttaatttacagagtggtattttacaaataaaaatgaggagt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccacgtagatgttcttccttaatttacagagtggtattttacaaataaaaatgaggagt 440

                                                                       
Query: 241 tcttattgtctaaaaaatcaacagagagggggggctagggagatggctggctatggacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttattgtctaaaaaatcaacagagagggggggctagggagatggctggctatggacag 500

                                                                       
Query: 301 tctccaaagtgtgagtccccagcacccacataaaagttgcccgcagtcatactgccagtc 360
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 501 tctccaaagtgtgagtccccagcacccacataaaagttgggtgcagtcatactgccagtc 560

                                                                       
Query: 361 accccagtactgggggagtagagacatgcagacagaccctcgggacatgctggcaaagca 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 accccagtactgggggagtagagacatgcagacagaccctcggggcatgctggcaaagca 620

                                                                       
Query: 421 gcccagctgaactctgagccctaagtttaataaaagattcagtctcaaaaaaataatgtt 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 gcccagctgaactctgagccctaagttcaataaaagattcagtctcaaaaaaataatgtt 680

             
Query: 481 ta 482
           ||
Sbjct: 681 ta 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)