BAC Information

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BAC

Clone NameMSMg01-058C21
Chromosome8 (Build37)
Map Location 19,798,272 - 19,798,517
singlet/doubletsinglet
Overlap genenone
Upstream geneMcph1, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567
Downstream geneLOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058C21.T7 (MSMg01no058_c21.b1)MSMg01-058C21.TJ (MSMg01no058_c21.g1)
ACCAG285156AG285157
length699717
length of high quality
(start - end)
490 (62 - 551)246 (82 - 327)
definitionCHROMAT_FILE: MSMg01no058_c21.b1 PHD_FILE: MSMg01no058_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:22 2005CHROMAT_FILE: MSMg01no058_c21.g1 PHD_FILE: MSMg01no058_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTGCGGCGCTAAACGACTCCTATATTCAGAAATGCGCGGAATTCTGTAAA
ATTCCCAATTGATAAAAACCTTTCAAGAGTACAGAAATATTACATAGGAA
GGAAAAGTGTAATATTGCTGCAGAAGAACAATGTTATAGGACTGTAGTGT
TCACTCTTGTTGACAATCAAATTAGTATAAATGAAGCGAAACACTGTTTT
ATTTTCTGTTGTATACTGACTCACTTTACTGGTCTGCTCTTTATCTTACA
GCATCCTTTGGGAACCTATGCTCACAGCAGGAGATTGGGAATGTGCTGGA
TCTTCTAGTATTTTTGAACATTTACAGTTACTCCTGACACTTCTTAGTTT
ACCCAGTGGTCTTCCAAGGATGTTTTAAAGGCTAACACTACTTTGTAACA
ACCTTCGATCCTTTTAATATGGATCCACAAGTCAAGGCATTTCCAATTCA
TAAATTTAATTTTAAATATTTGTAATTATCATCTTAGACACTAATAAATG
TGTATTATTCCATTCATCCATATGCACAGAATATATATAGGCCATCTCGT
ATTAACTGCCTAGTGGCCCTTTAGTTCTGTTTTAATTTAAGGAATTTTAA
AGCCAAAGCATTTAAATGACTATGCATAGATTCCTCGTTTACAATAATTC
GTGACCTACCATGATGATGTAATCGACCCTCCCTGTCTTGTCCTCCCTT
NNTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATA
AAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAA
GCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTTTGGGGTTT
TTTATTAATATTAATTAGAACATTGATAGATTTCTCTAATTATTACCCAC
ATCAAGGTCTCCTCAGGAGGGCAGCCCTTTATTAATTTTTTTGTGAGATC
TGTGCTAAATTTCTACAGTATTCAACAGTTCTGTCTTGAGAAGTTCCAGG
TCTTTCTTTAAAAAAAAAAATCACAGAATTAAATAAACAAAACTCCCTGA
ATCCATCCTTTAAAGGCTACCTTTAGAAATTTTAAGATAGAGATTTAAGG
ATAACAAAATACAGATTAGTTATACTACATTATTACACTTAATATTGATA
ACTTATACTCTTGTGCCCATCTTTATTTCAACATCTTCTATGGAATATTT
TCTCCTTTACTTTCTGTTCTGATTTTTTTTTAACACTTGATCTTAGCCAA
AAGGTAAAGAAGCGACGGCATTTTCTTTCTTAAATACGATCATGTATGTA
CCCTCTTCAGGTTCCTCAGTCTTGGAGTAGTATCATGCAAAGGCCATTAT
TACCTGGTCAAGGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_c21.g1 MSMg01no058_c21.g1 CHROMAT_FILE:
MSMg01no058_c21.g1 PHD_FILE: MSMg01no058_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:22 2005
         (246 letters)



>mm_chr8_19798072_19798717
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaa 260

                                                                       
Query: 61  tggagagaagctggaagcaatcccactaaaatcagggactagacaaggctttggggtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagagaagctggaagcaatcccactaaaatcagggactagacaaggctttggggtttt 320

                                                                       
Query: 121 ttattaatattaattagaacattgatagatttctctaattattacccacatcaaggtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattaatattaattagaacattgatagatttctctaattattacccacatcaaggtctc 380

                                                                       
Query: 181 ctcaggagggcagccctttattaatttttttgtgagatctgtgctaaatttctacagtat 240
           || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaggagggcagccttttattaatttttttgtgagatctgtgctaaatttctacagtat 440

                 
Query: 241 tcaaca 246
           ||||||
Sbjct: 441 tcaaca 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)