Query= MSMg01no059_d08.b1 MSMg01no059_d08.b1 CHROMAT_FILE:
MSMg01no059_d08.b1 PHD_FILE: MSMg01no059_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:39 2005
(484 letters)
>mm_chr8_82273670_82274553
Length = 884
Score = 924 bits (478), Expect = 0.0
Identities = 484/488 (99%), Gaps = 4/488 (0%)
Strand = Plus / Plus
Query: 1 gggttgtagttgcctgtaaggggtatcttttttttttttttttttttt----cctagaaa 56
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 197 gggttgtagttgcctgtaaggggtatctttttttttttttttttttttttttcctagaaa 256
Query: 57 catttcactgtagaggttaataaaagagtaaacctgagataacatttcactttcttctta 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 catttcactgtagaggttaataaaagagtaaacctgagataacatttcactttcttctta 316
Query: 117 taaagattttaggatcacttgtctttgttttttgaacaattaaaatgcacttttgcattt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taaagattttaggatcacttgtctttgttttttgaacaattaaaatgcacttttgcattt 376
Query: 177 catgattgctgtgtgtacattttaattattaattcagattaccagaataagactactata 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catgattgctgtgtgtacattttaattattaattcagattaccagaataagactactata 436
Query: 237 tttcaaggacagactattaaattttagttagtagatctggtagtcgatgatgcttttcag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttcaaggacagactattaaattttagttagtagatctggtagtcgatgatgcttttcag 496
Query: 297 ccccccatgtgttacactcaatttattacttactagttgtcataatctttttttgttttt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccccccatgtgttacactcaatttattacttactagttgtcataatctttttttgttttt 556
Query: 357 tcagtccagaggatggaaaagattgccatctaagcaaaatgtttcttacatatggcttct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcagtccagaggatggaaaagattgccatctaagcaaaatgtttcttacatatggcttct 616
Query: 417 ggggagaaataaaagtaccacgtccttagcatgttagttttctaagggcctcaggggtct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggggagaaataaaagtaccacgtccttagcatgttagttttctaagggcctcaggggtct 676
Query: 477 gaatttcg 484
||||||||
Sbjct: 677 gaatttcg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_d08.g1 MSMg01no059_d08.g1 CHROMAT_FILE:
MSMg01no059_d08.g1 PHD_FILE: MSMg01no059_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:39 2005
(496 letters)
>mm_chr8_82428978_82429868
Length = 891
Score = 692 bits (358), Expect = 0.0
Identities = 389/402 (96%), Gaps = 7/402 (1%)
Strand = Plus / Minus
Query: 1 tatcccctgctatctgcatgctctatatacttcctgcagataagctgcatacacacaatt 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 396 tatcccctgctatctgcatgctctatttacttcctgcagataagctgcatacacacaatt 337
Query: 61 caatgtcacgtgaactacacctcttgagaagagggcagatagcagtgaaggggccaagag 120
||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 336 caatgtcacgtga-----acctcttgagaagagggcagatagcagtgaaagggtcaagag 282
Query: 121 acagctttagaagctacagatgaatattggccagtaccaatgtccactgagatagactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 acagctttagaagctacagatgaatattggccagtaccaatgtccactgagatagactga 222
Query: 181 attgttcaattacagaaataacagggttggagttatagtcgttcagttattaaca-tggt 239
||||||||||||||||||||| |||| |||||||||||||||||||||||||| | ||||
Sbjct: 221 attgttcaattacagaaataaaagggctggagttatagtcgttcagttattaa-agtggt 163
Query: 240 tgtcttgcaagcatgagggccagaatcctactcccagattcaacattttacaaaacagac 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 162 tgtcttgcaagcatgagggccagaatcctacccccagattcaacattttacaaaacagac 103
Query: 300 atggaagctcttgctcataattccagggctataaaaccagagatggtggatctctgccat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 atggaagctcttgctcataattccagggctataaaaccagagatggtggatctctgccat 43
Query: 360 ccatgagtcagccagtctatcctacctgacgaggtaggtact 401
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ccatgagtcagccagtctatcctacctgacgaggtaggtact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 891
Length adjustment: 10
Effective length of query: 486
Effective length of database: 881
Effective search space: 428166
Effective search space used: 428166
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
