BAC Information

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BAC

Clone NameMSMg01-059O03
Chromosome8 (Build37)
Map Location 26,018,468 - 26,018,825
singlet/doubletsinglet
Overlap geneAdam32
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5
Downstream geneAdam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059O03.T7 (MSMg01no059_o03.b1)MSMg01-059O03.TJ (MSMg01no059_o03.g1)
ACCAG286457AG286458
length758774
length of high quality
(start - end)
348 (47 - 394)86 (187 - 272)
definitionCHROMAT_FILE: MSMg01no059_o03.b1 PHD_FILE: MSMg01no059_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:29 2005CHROMAT_FILE: MSMg01no059_o03.g1 PHD_FILE: MSMg01no059_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCGAAGAGGATCCG
CGGAATTCTCTCTCTTCTCTTCCCATACCTGAACCTGACCCCAGCTCCTC
CCCCCTTTTCTTTCCTGGATGCTTATTCTTGTCTCTGAGTTCTATATATG
TTGATGTTTCCTTCTTACTCACTTAGCATCTTCCTCGTTTAGCTTGAGAC
ATTGCCTATAGCATTTTTTATAGGACGTGTTTGTTGTTAGTAAACTCCCC
CAGCTTTTGTGTGACCAGCTTTTGTGTGTCTTTACTTCTTATCTCTACAG
CATAACTTTGTCAGGTATATTATTTTTTTAAAATTTTATTGGTATAGTAT
TTTTGATTCACAGCTCTCTCCTCCAGACCTGTGGATATGTGATGCCACCC
TGTGTTAGCTTGTAACCCCTCTTCTACTTGAGAACTTACCTGTCAGCAAA
AAGGGTCCCTTCACCCGTTGATGCTTCTGAGAATCATCTCTTACTCTTCC
CTCTTTAAAAGTCATTGGTATTGTATCTTAGCGCAATAACTGGCATGCCA
GTATTGAGACTACGTAATTTACTTACAATTTTTGCGGACTCGCATTTGGG
ATTTTTTTCTAACATCTACTACTTTCTTCGATTTCATTTTTTAACCATGA
TGATAATTCTCTCACGCTTTCTTTTTTTTTTTTTTTAAACTATATTTACC
ATATACCTTTCCATTGGTCGGTATACATACATTCTTCTCCCTATTCTTTC
CTTTATTT
NCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGATAAGAGTCCATCACCA
TCATGTTGGAAAGCATAGCAATAGGCAAAGATGGTGAATGGACTAAGCTG
AGAGCCTACATCTTACACATCAAGCATGAAGCAGATAGAGCAAACCTGAG
AACAATGTCTTTAAACTCTCACAGCCCACTATACGTGAGCTATTTCCTAC
AGTAAGGCCCTGCCTACTCAGCTTTCCCAGACACAGCACGCACCCAAGTT
TTCAAATGCCTGAGACCGTGATTTGCCATTACCTTCAAATCACTGCACGA
ACCATATCCGTATTTTCCGCATCCCCTCGTAACAAGGAAACGTCCCCCTC
AATTATCACCAATAAACTGAAACGCCCCATCTGCTGTCAAACGTATGGAA
CTAAAAGTTATTTCTACTGCCACGGACAACTACTCCTAACTTGTACCCCA
CAATGCCTCCCCCCACGCCCTGAATCTAACCCTCCTATTTACCCCACATT
ACCCGCCTCTCGTATGCCTTGTACCCCCCGCACCGCTCACCACTGAAAGT
AACGATGACGCCCCCACCCCTGACCCGTCACCCTTATTTTTTCTTTTACA
CAATCTTACTTTTATATTGTACTTGTACATTTCCCCCTTACTCCCCACTT
ACTTTACTCCCTTACTTAAATACCCTACCCTTTGTTTGTTAAATTTCTTC
CTCCCTTACTCCCCCCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_o03.b1 MSMg01no059_o03.b1 CHROMAT_FILE:
MSMg01no059_o03.b1 PHD_FILE: MSMg01no059_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:29 2005
         (348 letters)



>mm_chr8_26018468_26019215
          Length = 748

 Score =  580 bits (300), Expect = e-170
 Identities = 337/358 (94%), Gaps = 16/358 (4%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctctctcttctcttcccatacctgaacctgaccccagctcctccccccttttct 65
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaattctctcccatctcttcccatacctgaacctgaccccagctcctccccccttttct 299

                                                                       
Query: 66  ttcctggatgcttattcttgtctctgagttctatatatgttgatgtttccttcttactca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttcctggatgcttattcttgtctctgagttctatatatgttgatgtttccttcttactca 239

                                                                       
Query: 126 cttagcatcttcctcgtttagcttgagacattgcctatagcattttttataggacgtgtt 185
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 238 cttagcgtcttcctcgtttagcttgagacattgcctatagcattttttataggacatgtt 179

                                                                       
Query: 186 tgttgttagtaaactcccccagcttttgtgtg---a------------ccagcttttgtg 230
           ||||||||||||||||||||||||||||||||   |            ||||||||||||
Sbjct: 178 tgttgttagtaaactcccccagcttttgtgtgcccagcttttgtgtgcccagcttttgtg 119

                                                                       
Query: 231 tgtctttacttcttatctctacagcataactttgtcaggtatattatttttttaaaa-tt 289
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 118 tgtctttacttcttatctctacagcataactttgtcaggtatagtatttttttaaaaatt 59

                                                                     
Query: 290 ttattggtatagtatttttgattcacagctctctcctccagacctgtggatatgtgat 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  ttattggtatagtatttttgattcacagctctctcctccagacctgtggatatgtgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)