Query= MSMg01no061_b14.b1 MSMg01no061_b14.b1 CHROMAT_FILE:
MSMg01no061_b14.b1 PHD_FILE: MSMg01no061_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:59 2005
(665 letters)
>mm_chr8_29376392_29377456
Length = 1065
Score = 1185 bits (613), Expect = 0.0
Identities = 649/661 (98%)
Strand = Plus / Plus
Query: 5 attccaagttcttattcactatttgtgcatgaataggtatatatttcagctcttctgcac 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 attccaagttcttaatgactatttgtgcatgaataggtatatatttcagctcttctgcac 264
Query: 65 tctacacagtccctttaagtattcacattatatcaacagtaatgtaataattacctttgt 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 tctacacagtccctttaagtattcacattatatcaacagtaatgtaacaattacctttgt 324
Query: 125 ccattagattccttatgttttagactgatacaataatgctgtgtagaaatactgtaaaga 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 ccattagattccttatgttttagactgatacaataatgctgtatagaaatactgtaaaga 384
Query: 185 tcaagtatgaaatataggaatatatgcagacactttcttagaatgatattagattagtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaagtatgaaatataggaatatatgcagacactttcttagaatgatattagattagtca 444
Query: 245 caagttagttttatataaagaaatttttttaggtaattggagctttaatcttgtagaaac 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagttagttttatataaagaattttttttaggtaattggagctttaatcttgtagaaac 504
Query: 305 tgacaaagatcaacagaaactaaatatattttctgtcttaaatctctctcttcctatatg 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgataaagatcaacagaaactaaatatattttctgtcttaaatctctctcttcctatatg 564
Query: 365 tatgtatgcagcactatataaatatatgtctgcaaacacatataactataaatatacgta 424
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgtttgccgtactatataaatatatgtctgcaaacacatataactataaatatacgta 624
Query: 425 tacatgcacagagtgatatgtgtgaatatacaaatgtctaaacatttatctacagtagga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacatgcacagagtgatatgtgtgaatatacaaatgtctaaacatttatctacagtagga 684
Query: 485 taatcaattttaccatcttcattggattctcacatctgtatgaaaggtgtttatgtgact 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taatcaattttaccatctttattggattctcacatctgtatgaaaggtgtttatgtgact 744
Query: 545 taattaagtgtactcaattaacacatggtatactctgagagagacatgatgtctgtcttc 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 745 taattaagtgtactcaattaacacatggtatactctgagagagacatgatgtctgtctcc 804
Query: 605 tcacccaagtgaatatacccaaaagagagaggccctacctgggaaaacttgaattgtgtt 664
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 805 tcacccaagtgaatatacccaaaagagagaggccctacctgggaaaactagaattgtgtt 864
Query: 665 t 665
|
Sbjct: 865 t 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_b14.g1 MSMg01no061_b14.g1 CHROMAT_FILE:
MSMg01no061_b14.g1 PHD_FILE: MSMg01no061_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:59 2005
(653 letters)
>mm_chr8_29493150_29494200
Length = 1051
Score = 1158 bits (599), Expect = 0.0
Identities = 639/653 (97%), Gaps = 2/653 (0%)
Strand = Plus / Minus
Query: 1 tgttgctttgtcacagctggattctgcagaaaaaacaagctctcagcagctcagcaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tgttgctttgtcacagctggattctgcagaaaaaacaagctctcagcagctcagcaggca 899
Query: 61 ggcagtctgctcaagtttcaggtaggaagatgcaaatgtagcaaggccaggcacctggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ggcagtctgctcaagtttcaggtaggaagatgcaaatgtagcaaggccaggcacctggtt 839
Query: 121 ccagccttcagagacttgtttagtcaagtcaaggctggggaagggctcacaagaaggcat 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ccagccatcagagacttgtttagtcaagtcaaggctggggaagggctcacaagaaggcat 779
Query: 181 gagagactgactacagaaaaccctatgagaaaacccaagaaagaaaccaactttctagtt 240
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 778 gagagactgagtacagaaaaccccatgagaaaacccaagaaagaaaccaactttctagtt 719
Query: 241 aagatggaaagacaggaagaatccaaggtatgagaaggcaaaaaagaatgtattgacatg 300
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 718 aagatggaaagacaggaagaatccaaggtatgagaaggcaagaaaggatgtattgacatg 659
Query: 301 gtggtcttctcaggcacattcttctagagaagagaaaaagtctcttcacatcttcagttc 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 658 gtggtcttctcaggcacattcttctagagaagagaaaaagtctctttacatcttcagttc 599
Query: 361 tctgcacatagaaccaagggcattcatctttcattctcaggcattaacctagttcataaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 598 tctgcacatagaaccaagggcattcatctttcattctcaggcattaacctaggtcataaa 539
Query: 421 aaaaaatgcttgtgtcaattaaagaaattagttaattatgactaacatttttaatactgt 480
| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 538 ataa--tgcttgtgtcaattaaagaaattagctaattatgactaacatttttaatactgt 481
Query: 481 gctacagaatagttgttaatgtgatattagcaaatgtcttcaagaatcaggtggcaggta 540
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctacagaagagctgttaatgtgatattagcaaatgtcttcaagaatcaggtggcaggta 421
Query: 541 aggtaagtatgtcagtggcccaagggtaaaatgtgtggaatagcatagtaacactaagag 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 420 aggtaagtatgtcagtggcccaagggtaaaatgtgtggaatagcatagtaacactaagtg 361
Query: 601 cacttacttgcttacaaagttaggttcactgaatgcaaacccactgtgctgag 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cacttacttgcttacaaagttaggttcactgaatgcaaacccactgtgctgag 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1051
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1041
Effective search space: 669363
Effective search space used: 669363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
