BAC Information

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BAC

Clone NameMSMg01-062A20
Chromosome8 (Build37)
Map Location 107,290,635 - 107,291,338
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050
Downstream gene4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062A20.T7 (MSMg01no062_a20.b1)MSMg01-062A20.TJ (MSMg01no062_a20.g1)
ACCAG288117AG288118
length1,1661,181
length of high quality
(start - end)		666 (137 - 802)696 (139 - 834)
definitionCHROMAT_FILE: MSMg01no062_a20.b1 PHD_FILE: MSMg01no062_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:14 2005CHROMAT_FILE: MSMg01no062_a20.g1 PHD_FILE: MSMg01no062_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTTTNNNNAACATTGGGCGCTAAGACTCACTAAGGGAGAGGATCCG
CGGAATTCATTGTTTTTAAAGCTCATTAAAACTCCATTTTGTAAATGTAC
CACATTTTCTGTCCCCATTTCTCTGTTGCACCCCCATCTGGGTTCTTTCC
AGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTA
TCCTTCTTACCGGTTGGGACATCTTCTTGATATATGCCCAGGAGAGGTAT
TGCTGGATCCTCTGGTAGTACTATGTCCAATTTTCTAAGGAACCGCCAGA
CTGATTTCCAGAGTGGTTGTACAACTTGCAATCCCACCAGCAATGGAGGA
ATGTTCTTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAATTT
TTGATATTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTT
GATTTGCATTTCCCTGATGATTAAGGGTGTTGAACATTTTTTCAGGTGCT
TCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAG
CCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACATTCTTGAG
TTCCTTATATATATTGGATATTAGTCCCCTATCAGATTTGGGATAGGTAA
AGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCT
TTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCGATTCT
CGATCTTACAGCATAAGCCATTGCTGTTGTATTCAGGAATTTTTCCCCTG
TAACTATATCTTCAAGGCTTTCCTCTACTTTCTCCTCTATAAGTTTCAGT
GTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAAATTTGACCTTAGT
ACAAAGAGATAGAAATGGATCAATTTTCAATCTTCTTCATGAATATCGCC
CGGTATTCCCACCACCTTTTGTTTGAAAAGTGGTCTTTTTTCTCCTTGGA
GGTTTTTATCCCCCTTTTTAAAAATAAGTGGTCATCATTTTGTGTGGTAT
ATTTTTCTTGGTCTTCATATCTTTTTCTTTTGTTTCATTCTGGTTCTCTT
TTTATTCCATATTTCTGTTTTATTTATTACTTTTTCTTTTTTTTCATTCT
TATTTCTCTTTCTTCT

CCTTCTTTNNNATCTCACGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGCTCTGTTTCTCTTTGCT
GGCCTCGCTACCAGCCGTTTGTTCTTGGTCCCCCGGCAGTCTCCTTCCTC
TGTGCCAAGATCCACTTAGACAGGGATAACTTCTAGATGCTGACTCCTGG
TCGTTAAACAAAGATCTGGGCTTAGATATTATGGGTTTTATCTATAGGTA
CTTCCCTCTGAGGGGAAAGAGAAGCTGTCCCCACCACATGGCTGTACATG
CAATGGATGCTGATCACTCTGATTGTTTAATCATCATATCCATACCTCTG
GGCTCCCATTCCGCCACCTCCTTCATTGCTCATACTAGCCCTAACTGGTA
TACAAGGCTTGGAGTCATCAGGGCTCTGAGTGACGTTTTTCTCATCCTGC
TGGAAGAAGGTATTTGCAGTAACTGTAACATCAATGGCCAGCTCCAATAG
CCCTTGTTCCACCAGGATAAGTGAGACCTGCAGTTGGACATGCAGCCTAC
ATGGGCCGTGAACTGAAAGTCCACAGGCTGAAATGTTGGATCCAGATCCT
GTCCTCAGATGATCCAGGAGATCAAATGGGCTGAGGACAAGTATATAGAA
CATGTAAGGATGGCACTGTCATGAGTGCAAGTGAGGGCGTCCTGAGATGC
TCATTCCCACTCAGAAAGCCAAGGGTGGCTGCATTGAATTTGTGTCTATG
TATCTACTCTTCAACAGCCTGTTCAGCTAACATTTATGAGGAATCCTCTC
TATGACCCTAGTTACAAAGCCTATATTGTCTCTGTCTTGCTATGTTCCCT
GAGTAAATGACCCAACTGAATATATGTGTGTATGTGTGTGTATATATTAT
ATACCTATATTTACCTATATATTTATATAGCAAATCCCCCCCAGACTTAT
TTTGTATGGATTCCCCGGGGATGGTACCCTTTTTCTAAACCTTTTCCTTG
AAACTGGGTTTTTTTTATCTTTTCCCCTACTTCATCTTCTCCCCAATTTA
TTTCCCCAGTCTTCAACATATTTTTTGTAAACACCTTGCTTTTTAAAATA
GTTGTCTCCCCTTCTTAGGTTGAAATATCACTATTTTTTATTTCATCTTT
TTTTACTGAACCTGTCTTTTTTTTGTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_a20.g1 MSMg01no062_a20.g1 CHROMAT_FILE:
MSMg01no062_a20.g1 PHD_FILE: MSMg01no062_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:14 2005
         (696 letters)



>mm_chr8_107290443_107291538
          Length = 1096

 Score = 1311 bits (678), Expect = 0.0
 Identities = 694/704 (98%), Gaps = 8/704 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctccttcctctgtgccaagatccacttagacagggataacttctagatgctgactcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtctccttcctctgtgccaagatccacttagacagggataacttctagatgctgactcct 252

                                                                       
Query: 61  ggtcgttaaacaaagatctgggcttagatattatgggttttatctataggtacttccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggtcgttaaacaaagatctgggcttagatattatgggttttatctataggtacttccctc 312

                                                                       
Query: 121 tgaggggaaagagaagctgtccccaccacatggctgtacatgcaatggatgctgatcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgaggggaaagagaagctgtccccaccacatggctgtacatgcaatggatgctgatcact 372

                                                                       
Query: 181 ctgattgtttaatcatcatatccatacctctgggctcccattccgccacctccttcattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctgattgtttaatcatcatatccatacctctgggctcccattccgccacctccttcattg 432

                                                                       
Query: 241 ctcatactagccctaactggtatacaaggcttggagtcatcagggctctgagtgacgttt 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctcatactagccctaactggtagacaaggcttggagtcatcagggctctgagtgacgttt 492

                                                                       
Query: 301 ttctcatcctgctggaagaaggtatttgcagtaactgtaacatcaatggccagctccaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttctcatcctgctggaagaaggtatttgcagtaactgtaacatcaatggccagctccaat 552

                                                                       
Query: 361 agcccttgttccaccaggataagtgagacctgcagttggacatgcagcctacatgggccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agcccttgttccaccaggataagtgagacctgcagttggacatgcagcctacatgggccg 612

                                                                       
Query: 421 tgaactgaaagtccacaggctgaaatgttggatccagatcctgtcctcagatgatccagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgaactgaaagtccacaggctgaaatgttggatccagatcctgtcctcagatgatccagg 672

                                                                       
Query: 481 agatcaaatgggctgaggacaagtatatagaacatgtaaggatggcactgtcatgagtgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agatcaaatgggctgaggacaagtatatagaacatgtaaggatggcactgtcatgagtgc 732

                                                                       
Query: 541 aagtgagggcgtcctgagatgctcattcccactcagaaagccaagggtggctgcat---- 596
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
Sbjct: 733 aagtgagggcgtcctgagatgctcatccccactcagaaagccaagggtggctgcatggct 792

                                                                       
Query: 597 ----tgaatttgtgtctatgtatctactcttcaacagcctgttcagctaacatttatgag 652
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gcattgaatttgtgtctatgtatctactcttcaacagcctgttcagctaacatttatgag 852

                                                       
Query: 653 gaatcctctctatgaccctagttacaaagcctatattgtctctg 696
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaatcctctctatgaccctagttacaaagcctatattgtctctg 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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