BAC Information

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BAC

Clone NameMSMg01-062D19
Chromosome8 (Build37)
Map Location 59,233,576 - 59,234,271
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
Downstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062D19.T7 (MSMg01no062_d19.b1)MSMg01-062D19.TJ (MSMg01no062_d19.g1)
ACCAG288258AG288259
length1,1771,155
length of high quality
(start - end)
697 (134 - 830)680 (135 - 814)
definitionCHROMAT_FILE: MSMg01no062_d19.b1 PHD_FILE: MSMg01no062_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:37 2005CHROMAT_FILE: MSMg01no062_d19.g1 PHD_FILE: MSMg01no062_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAATCTTTTNTNTNATCAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCAGGAGGGGAAAGAACCTTATAAAAATATGTTGTATAAA
ATTCTCAAATAATCAATCCCTCTACTTTTAGACCCCCAAAAGTTCAAATA
CAGAAACAAACACTGAATTGTTTAATAGTATCATGTTTATAAACATGGGG
GGGTGTTGTGTGTATGCTCATGTATCTTTTATTGTGATCATAAAATACTT
TGGTGGAATGATATCTAAAACAATTTAATCTTTTCATACTAATATCCTTG
TACTAAAACAGGTTCATTGATGTCTCTTCTGCACCCATATTTTCAGATAA
GTTCAAAGAGGAATGTCTACAACCTGCTATTGAATTGGTTATTACTTAAC
AATAATAAAAATACTATCAGTTAATTGATACCTCATCTTGTTCCACAAAA
TAGACAGAACTTAATTGAGGGCATTATTGAGGGCATTGCTAGTCATGTAT
ATAGGAAGCTACTCTGCCAGGCAAACACCCTTACATGTATCTCCCCCCCC
CCAGGTACATTTTAACTACATTTCCCAGTACTCATATTCACTTTAGATGT
GAATTATTTTTCAAAATGATATATGATTTTTACACTTGGAGCTAAGCCAA
TAGTGGAGTCCCAGGCTCTGTGTATCATCTTACTTTTTTATATAGATTGG
TTCGGATTACAATGGCCTATGAGCTGGGCAGAACATGGGGAAGAACTAAT
TCTAAACACTCTTAAAATGCAGATGGCACAGACAATGAGAAAAGGCAAGT
TTCCATTATATTGAGAGACTTTTATTGTTTTATTTGGCACAATATAGCTT
CTTCATTTGGCATTATTGTTTTGTATTATTTGTCTCTAAAGTACTCTCTA
AATGAAATTTATGGGTTAATGAATTTATCTGGGAGATGAATCTGGGAAGT
GTAAAAATGCCTTGGAGTATGGAGAGAAAGGAGACCTTACTTAAAACAAT
GTTTGCTTTTAAAGTGGGGGTTTTACTTTTTAAGGGCCCAAGGAAAAATA
TTTCAAGGGGGTTATATGCATTTTTTCCTTTTATTTAGCAACCCCTTTTA
AAAAGTTCCCTTGTGTGCTATAATTTTTGTTAAGTCCCCACCCTTTTTAA
CCCTCTTTGTTTCTCCCAAATAAAATT
NCCGACCTTTTTTNNTCACATGGGATGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAATAAAAACTGAGGAATATNGA
AGGGNAGAGAAGNACCTCCTTAAAAGATTCCCACCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGTCTTGTAAAACCACT
CTTGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCGAACT
GGTATTATGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGACACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATA
CAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGCGTGGA
CACTATGCCCCTCCTTAGAAGTGGGAACAAAAAAACCTTGGACGGAGTTA
CAGAGACAAAGTTTGGAGCTGAGATGAAACGATGGACCATGTAGACACTA
CCATATCCGGGGATCCATCCCATAATCAGCATCCAAACGCTGACACCATT
GCATACCCTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTT
GTGAGACTATGCCGGGGCCTAGCAAACACAGAAATGGATGCTCACAGTCC
GCTAATGAATGGATCACCAGGCTCCCAAGGAAGGAATTAGAAAAAGTACC
CAAGAACTAAAGGGTACTGCACCCCTATAGGGGATTAACTTTTTGAACTA
TCCCTTACCCCGGAATTTTTTGACCTTGCTGGATATGTAATCAAAAATGT
CCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_d19.b1 MSMg01no062_d19.b1 CHROMAT_FILE:
MSMg01no062_d19.b1 PHD_FILE: MSMg01no062_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:37 2005
         (697 letters)



>mm_chr8_59233375_59234471
          Length = 1097

 Score = 1127 bits (583), Expect = 0.0
 Identities = 669/703 (95%), Gaps = 14/703 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   cccaaaagttcaaatacagaaacaaacactgaattgtttaatagtatcatgtttataaac 61
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 202 cccaaaagttcaaatacagaaacaaacactgaattgtttcatagtatcatgcttataaac 261

                                                                       
Query: 62  atgggggg--gtgttgtgtgtatgctcatgtatcttttattgtgatcataaaatactttg 119
           ||||||||  | |  | | ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 262 atggggggcgggggcg-gcgt--gctcatgtatcttttattgtgatcataaaatactttg 318

                                                                       
Query: 120 gtggaatgatatctaaaacaatttaatcttttcatactaatatccttgtactaaaacagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtggaatgatatctaaaacaatttaatcttttcatactaatatccttgtactaaaacagg 378

                                                                       
Query: 180 ttcattgatgtctcttctgcacccatattttcagataagttcaaagaggaatgtctacaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcattgatgtctcttctgcacccatattttcagataagttcaaagaggaatgtctacaa 438

                                                                       
Query: 240 cctgctattgaattggttattacttaacaataataaaaatactatcagttaattgatacc 299
           ||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||
Sbjct: 439 cctgctattgaattggttattacttaacaataagaaaaatactatcaactaattgatacc 498

                                                                       
Query: 300 tcatcttgttccacaaaatagacagaacttaattgagggcattattgagggcattgctag 359
           |||||||| |||||||||||||    ||||||||||||||||||||||||||||||||| 
Sbjct: 499 tcatcttgctccacaaaataga----acttaattgagggcattattgagggcattgctaa 554

                                                                       
Query: 360 tcatgtatataggaagctactctgccaggcaaacacccttaca--tgtatctcccccccc 417
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 555 tcatgtatataggaagctactctgccaggcaaacacccttacacatgtatctcccccccc 614

                                                                       
Query: 418 cc---aggtacattttaactacatttcccagtactcatattcactttagatgtgaattat 474
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cccccaggtacattttaactacatttcccagtactcatattcactttagatgtgaattat 674

                                                                       
Query: 475 ttttcaaaatgatatatgatttttacacttggagctaagccaatagtggagtcccaggct 534
           ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||  |||
Sbjct: 675 ttttcaaaatgatatatgaattttacacttggagctaagccaatattggagtcccctgct 734

                                                                       
Query: 535 ctgtgtatcatcttacttttttatatagattggttcggattacaatggcctatgagctgg 594
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 735 ctgtgtatcatcttacttttttatatagattggttaggattacaatggcctatgagctag 794

                                                                       
Query: 595 gcagaacatggggaagaactaattctaaacactcttaaaatgcagatggcacagacaatg 654
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 795 gcagaacatggggaagaactaattctaaacacgcttagaatgcagatggcacagacaatg 854

                                                      
Query: 655 agaaaaggcaagtttccattatattgagagacttttattgttt 697
           ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 855 agaaaaggcaagtttccattatattgagagatttttattgttt 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)