BAC Information

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BAC

Clone NameMSMg01-062L05
Chromosome8 (Build37)
Map Location 61,756,968 - 61,757,620
singlet/doubletsinglet
Overlap genenone
Upstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062L05.T7 (MSMg01no062_l05.b1)MSMg01-062L05.TJ (MSMg01no062_l05.g1)
ACCAG288613AG288614
length1,2041,190
length of high quality
(start - end)
766 (100 - 865)665 (137 - 801)
definitionCHROMAT_FILE: MSMg01no062_l05.b1 PHD_FILE: MSMg01no062_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:34 2005CHROMAT_FILE: MSMg01no062_l05.g1 PHD_FILE: MSMg01no062_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTCTTGTNNNNNAACAGTGGGCGCTATAXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAGTTCCAGAGGATCCCTATAAATCTTCTAGGNTCT
GTAGGCACCAGACATGCACCCTTTGAAGACACATATTCTAGTAAAATAAG
CATAAAGCACACCAAAAAATCTAAAAATGAAAAAAAGTACAGCCACAGAC
TCAAGAACTAAGCACCGTGCTGAAAACAAATGCATCTTCCCAGGCATCTT
CAATGTCTTATGCTCTGTAAAGTTTCTTAATGAACCAAACGTAAGACAAT
AGAATAATCCTTGAAGACATCAGTGTATTTCACTATGTGTTTGTGTTTGT
GTGCATGTGTTTGTGGATGTTTGAAAGGATGGGCATTGGTGTGTGTGTGC
ACATATTGTGTGGGAGTTGTCATACATGTTGAGCCCCAAGGATGACATTT
GATTGTCTTCCTTAATTGCTTTCTATCTTACATATTTAGAGTCTCACTTG
AACCCAAGCTTCCCATTGAACTAGCCTAGCTGCACTTTGCCTCCTGACCC
TGCTCCCCTCACTCCTTAGGAACTCTTACTCTGGATTTTTTTGTATGACC
TAAAATAGTGAAAAAGTACCCTAAAACTATTATCTTTGTTCTGTACTGAT
GTCATTGCCAAATGTTACATATTGTATGCAGCTTCTTGATTTATAGAAAG
GGAGATTTGTTTTCACTTTTTGTAGCCACTTGCTAATATATGAGTTAAAA
TATCCCACATAAATTTTTAAACCACCTTAAAATTCAGAATCTTCACTTTC
TGAATGTTTAGTTTCGCATTATTTTTATATATACTATCCCTAACATATAA
GTCAAGCTCATTTGGCTACACTTCACAAATCTTTCACAGAAGTTAACTTT
AAGCTATTTATTTTCATATGATCAAATATATTTCTGATTCATGGCAGTTT
GTAAATGATATCGTTTATATTAAAATTCCCTAATATGAAAATCAAAGTCT
TTGAATAAATGGTTACCTGAAAATTGAAAAAATAATCTTCCTAAAAAAAG
TAAGGGCTTTAAAGGGTTTTTTTTTCTTTTTTAAAGGGAGGAAAAAATTC
TTCCTAAGGGGGCTTTTTTATAACCTTCTTTTATAAAAAAAATTTTCTTT
TTTTTAAATTTTCTAAAAGCAATCCCTCAAAAGGATTCCTATAACCCCTC
CCCC
CCTCCTTTTNTNNNTACCATGGTAGNCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGCGCCGCGGGGTAGGG
GGATTTCTCTGGGAACCGTTATTCTTGTTCTGGTCATTTTTCTGAGAACA
GCTCATTTTGTTCTGGCAGCTGTAGACTTAGTCGTCTTGACTGCTATGTT
TTTGAAAGTCCCTTCAGAGGGGAAGGGGCTGGGTGGTCTTGAACTTATTT
TGGATCCTACAATACCACACACACACACATTACTAAAAAATTAAAAATTC
GTGGTAAAAAATGCCAAACTATGATAATATACAAATAATCCACACGAAAC
CTTTTCCTGGTTGAGCAGAAATTCCTGTGCTTTTCAGAAGTGTTTAAACC
ACTTGCACGTTCTTTTAAGACAAGGTAAATTTAACAATTCATTGTTGATG
AGTATACTATAAAATGAACAAAGGAAAAATAGTTGAGGGACTTGACCATG
TCACCCATTCTTTTCCATAAATGGGCAAGATTAATCGTCAGTAGAAATCA
AATATTCCTCTTAATATTGTGCAGTGAAAACAACACTCTACCACTTCAGA
CCTCTTTACACAGTCTTTAAAACCTAAGGCATTTCAGTTTTAGAGGACAT
CTTATAAATGCCCTTGGAACCACTACATGCAATGAATTTCTTGGGAGGCA
ATACCAGAACAGATATGGGAAACTACTGGGAAAACAAATGGCTTTGTGTC
TTTTTTGTTTTTTGTTTTTTGTTGTTTTTGTTTTGACACATCCTATAATG
ATGTAAGATATGGCAAAAGCCACCAGAGGGATCTGGATTCTTCTAATGAT
TGGAGAAAAACTATATTATGTGTGCCTCTAACTGCAAAATGTAAAATAAA
ATATATTTTAAAAATAATTGCTTTATTTGNAAACACATTATGACAGAGAA
TTTAAGTTTGTTTTTGTTTCCTTGGACAGCATCCTTTTCCCAAACTTGGT
AATTTCCGATTTTAAAATTTGACTCCCTCCTTGCACTGACAAAATTTACT
AACCATTGATGGTATTTTGCTCGTGGCCAAAATAATTCTACCAGTTACCT
TTCCTTGTTTAAAACAATTTTGTTCTCGTGGTTGTTTAAAATTCCTTTTT
ATCAAAATGCTGGCATCCCCCTTATATTCCCCTGGGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_l05.b1 MSMg01no062_l05.b1 CHROMAT_FILE:
MSMg01no062_l05.b1 PHD_FILE: MSMg01no062_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:34 2005
         (766 letters)



>mm_chr8_61756455_61757620
          Length = 1166

 Score = 1232 bits (637), Expect = 0.0
 Identities = 649/653 (99%)
 Strand = Plus / Minus

                                                                        
Query: 114  caccgtgctgaaaacaaatgcatcttcccaggcatcttcaatgtcttatgctctgtaaag 173
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1166 caccgtgctgaaaacaaatgcatcttcccaggcatcttcaatgtcttatgctttgtaaag 1107

                                                                        
Query: 174  tttcttaatgaaccaaacgtaagacaatagaataatccttgaagacatcagtgtatttca 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 tttcttaatgaaccaaacgtaagacaatagaataatccttgaagacatcagtgtatttca 1047

                                                                        
Query: 234  ctatgtgtttgtgtttgtgtgcatgtgtttgtggatgtttgaaaggatgggcattggtgt 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 ctatgtgtttgtgtttgtgtgcatgtgtttgtggatgtttgaaaggatgggcattggtgt 987

                                                                        
Query: 294  gtgtgtgcacatattgtgtgggagttgtcatacatgttgagccccaaggatgacatttga 353
            ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 986  gtgtgtgcacatactgtgtgggagttgtcatacatgttgagccccaatgatgacatttga 927

                                                                        
Query: 354  ttgtcttccttaattgctttctatcttacatatttagagtctcacttgaacccaagcttc 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  ttgtcttccttaattgctttctatcttacatatttagagtctcacttgaacccaagcttc 867

                                                                        
Query: 414  ccattgaactagcctagctgcactttgcctcctgaccctgctcccctcactccttaggaa 473
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 866  ccattgaactagcctagctgcactttgcctcctgaccctgctccactcactccttaggaa 807

                                                                        
Query: 474  ctcttactctggatttttttgtatgacctaaaatagtgaaaaagtaccctaaaactatta 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806  ctcttactctggatttttttgtatgacctaaaatagtgaaaaagtaccctaaaactatta 747

                                                                        
Query: 534  tctttgttctgtactgatgtcattgccaaatgttacatattgtatgcagcttcttgattt 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746  tctttgttctgtactgatgtcattgccaaatgttacatattgtatgcagcttcttgattt 687

                                                                        
Query: 594  atagaaagggagatttgttttcactttttgtagccacttgctaatatatgagttaaaata 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  atagaaagggagatttgttttcactttttgtagccacttgctaatatatgagttaaaata 627

                                                                        
Query: 654  tcccacataaatttttaaaccaccttaaaattcagaatcttcactttctgaatgtttagt 713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  tcccacataaatttttaaaccaccttaaaattcagaatcttcactttctgaatgtttagt 567

                                                                 
Query: 714  ttcgcattatttttatatatactatccctaacatataagtcaagctcatttgg 766
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  ttcgcattatttttatatatactatccctaacatataagtcaagctcatttgg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 766
Length of database: 1166
Length adjustment: 10
Effective length of query: 756
Effective length of database: 1156
Effective search space:   873936
Effective search space used:   873936
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)