Query= MSMg01no062_l16.b1 MSMg01no062_l16.b1 CHROMAT_FILE:
MSMg01no062_l16.b1 PHD_FILE: MSMg01no062_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:37 2005
(406 letters)
>mm_chr8_76043681_76044486
Length = 806
Score = 737 bits (381), Expect = 0.0
Identities = 399/405 (98%)
Strand = Plus / Plus
Query: 1 gccacttgtgataatgtctctctgtcataccgtacttgtatctctctgcaattgtgatcc 60
||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct: 201 gccacttgtgataatgtctctctgtcataatggacttgtatctctctggaattgtgatcc 260
Query: 61 taactcttccttctatcagttgtctttgtatgctggcttgaataagaatggccactaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactcttccttctatcagttgtctttgtatgctggcttgaataagaatggccactaaag 320
Query: 121 aagtggatgctcacagtcatccattggacagagcacagggtctccaatgaaggatctaaa 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 aagtggatgctcacagtcatccattggacaaagcacagggtctccaatgaaggatctaaa 380
Query: 181 gaaagtacccaaggagttaaaggggtctgcaaccctataggaggaacaatataaactaac 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaagtactcaaggagttaaaggggtctgcaaccctataggaggaacaatataaactaac 440
Query: 241 cagtacctcccagaactgtgtctctagttgcatatgtagcagaggatggcctagtcggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtacctcccagaactgtgtctctagttgcatatgtagcagaggatggcctagtcggcc 500
Query: 301 atgaatgggataagaggcccttgggcttgcgaagatcatatgtcccagtacaggggaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaatgggataagaggcccttgggcttgcgaagatcatatgtcccagtacaggggaatg 560
Query: 361 ccagggccaggaagtgggagtgggtgggttggggagcagggttgg 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagggccaggaagtgggagtgggtgggttggggagcagggttgg 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_l16.g1 MSMg01no062_l16.g1 CHROMAT_FILE:
MSMg01no062_l16.g1 PHD_FILE: MSMg01no062_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:37 2005
(772 letters)
>mm_chr8_76146500_76147670
Length = 1171
Score = 1402 bits (725), Expect = 0.0
Identities = 760/773 (98%), Gaps = 6/773 (0%)
Strand = Plus / Minus
Query: 1 acaagacattgggaagaaattgggaaaatctattaacacatgggccctagctaataataa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1101 acaagacattgggaagaaattgggaaaatctattaacacatgggtactagctaataataa 1042
Query: 61 tgtatcattatggttcattaattgtgacaaatgtagaataatataagatattagtaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 tgtatcattatggttcattaattgtgacaaatgtagaataatataagatattagtaatag 982
Query: 121 aggaagctgactgtgtcatatatggtaactcagtgttccatgctcatcatgattctggag 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 981 aggaagctgacactgtcatatatggtaactcagtgttccatgctcatcatgattctgaag 922
Query: 181 aacaaaaactgttctaaaataaagtattcagtaaaaccacagaacaaagggttctctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 aacaaaaactgttctaaaataaagtattcagtaaaaccacagaacaaagggttctctgtg 862
Query: 241 aagggtactgcagaggattccacatccatctagacactctccacagtcatgttgcatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aagggtactgcagaggattccacatccatctagacactctccacagtcatgttgcatgtg 802
Query: 301 ttacaaagggatacttatatttcctcctttaaacctatttagaatacactgtaattgcac 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 801 ttacaaagggatac-aatatttcctcctttaaacctatttagaatacactgtaattccac 743
Query: 361 cttcatattgattctctagaaatgttcaaatatttacaagactctaagttacttcacctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cttcatattgattctctagaaatgttcaaatatttacaagactctaagttacttcacctc 683
Query: 421 ttgcaagggcaggacaatgacagtgaaatcaatcagcatataatatgatcttcagtgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttgcaagggcaggacaatgacagtgaaatcaatcagcatataatatgatcttcagtgatg 623
Query: 481 ctcatagaagggagccagagcatcttatcagggagttcttaatttttctgggaaaattat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctcatagaagggagccagagcatcttatcagggagttcttaatttttctgggaaaattat 563
Query: 541 gtgacagctagcctttcaacgataattaatgttactctagagtgtagagtggtaaaggat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtgacagctagcctttcaacgataattaatgttactctagagtgtagagtggtaaaggat 503
Query: 601 aggtgaggaagaatgaactttaaagttagagccacataggttcaaattccagtctaatac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aggtgaggaagaatgaactttaaagttagagccacataggttcaaattccagtctaatac 443
Query: 661 ttctaattctatgtgcttaaacataggactccagctttcttttttatacaaaaatgaaaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttctaattctatgtgcttaaacataggactccagctttcttttttatacaaaaatgaaaa 383
Query: 721 ataaaaaaaaaaatccatctgaagag-gttaatgtaatataatgactatcaag 772
|| ||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 382 at---aaaaaaaatccatctgaagagag-taatgtaatataatgactatcaag 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1171
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1161
Effective search space: 884682
Effective search space used: 884682
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
