BAC Information

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BAC

Clone NameMSMg01-063D01
Chromosome8 (Build37)
Map Location 24,710,277 - 24,710,424
singlet/doubletsinglet
Overlap genenone
Upstream geneDkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
Downstream geneLOC100040931, Zmat4, 1810011O10Rik, Indol1, Indo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063D01.T7 (MSMg01no063_d01.b1)MSMg01-063D01.TJ (MSMg01no063_d01.g1)
ACCAG288988AG288989
length827818
length of high quality
(start - end)
151 (215 - 365)37 (166 - 202)
definitionCHROMAT_FILE: MSMg01no063_d01.b1 PHD_FILE: MSMg01no063_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:27 2005CHROMAT_FILE: MSMg01no063_d01.g1 PHD_FILE: MSMg01no063_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNTTTTTTCTATXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
CATACCCCTTCAGTGCTTCAAGGATGAGGGATGTCTTGGTCATGTTACCA
TGGGTGAGTATTACCAATCAAACTACACAACTTGCAAACAAGCTGCAACC
AAGGCAGGGCCATCCCTTCCAGAGATGTCCCTCGAGTGACGGGGGCTAAC
ATGGCAGGCCCCAGGTGAAAGTACCCCATCCCATAACCTCTTACCTTATG
AGAGGAAAATTCCACTAGGAGAAGCCAGGGCCTGGGCAGATGGTAGCAAG
GAGAGACTCACCCTGTAAGCTTGGAAGTTTGCTGCCCCAAACTGGCTTTC
TCTAATATATGCTATCTTCTCTCTCATCCCCCTCTTACATTCTAGAACTT
CCCTCTTTGCCTCCTCTGCCCTTCACCCCCAACCCCTAACCGTATACCTC
CCCCGTATACTGTTCAAAACTCATGTACATCATCAGATTGCACCCACGCT
TACCCTAACCCTGCCACACCCCCCCCACCCCTGCTTTTCTCCCAGACCAT
ACCCCCCAAGCCCTGAATACTGTGTCTAATCGCAGAACTCCCCAACTTCC
ATATTCCCCCAACTAATTATCCAACCCCCCTCACCTAAAACCCCCACCCA
CGGTTTTTGCCCTGCTCATTTCGCGTTTTCATCATCCTTATCATGTTTCT
CACATATCCTCCCCCCCCACGCTCATT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCNNNNNNTTGTCCCNNNAGTACTATGAAAGTGAX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGAACACTTCTCCCCTGCCCGGTAAGTTCTCCCGTATTCC
AGGGCCACATGGAAGCATCCCTTCAATTTCTGCTTTGTAGGTTTCTTCCC
ACAGCTGCCCTGCCTTTTAGACGCCCTGTTCCCAGAAGGAGTGCCCATGA
CTGTGGCTCTTCCCATTGGCTCATTAGCATATTTGTTGTTTCCGGCCCCA
TGGCCACTCCTGTACCCTCTTAGAACAGCCTTCTTCACTGGTTCTTTTAA
GTATCTGCCTTCTCTCTACCCTCTAGATGCCCTGCTGCATTGTTTTTTTT
TCCATCTCCCCCCAATATCTTTTTGGCATCCATAAGGAAACCCTACTCCT
TGCCCCCTGAAAAGAAAACACTAAACCTGCTTTTGATTGACAATCCATAT
TATTCAATCACTTGCTTTCTTAACTTCACACTTATACCCTTTCTACTCAC
CGTTCTTTCTTCATATCCTTATACTCGCTTTTCATTCTCCTAATTTCCTT
TTAACATGCTACCCACAATGACCACTTTTCCAACAATTTATATTGCTCTC
CACCCTCGCCTTCCCCCTTTCCCGTTTATACTCACATTTCATATCTGCTA
TATAAATATCTTTTAATTCCATCCCTTTACGCCCTATCTCACCAAATAAT
ACAATACACCCCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_d01.b1 MSMg01no063_d01.b1 CHROMAT_FILE:
MSMg01no063_d01.b1 PHD_FILE: MSMg01no063_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:27 2005
         (151 letters)



>mm_chr8_24710077_24710624
          Length = 548

 Score =  238 bits (123), Expect = 1e-67
 Identities = 144/151 (95%), Gaps = 3/151 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatcaaactacacaacttgcaaacaagctgcaaccaaggcagggccatcccttccagag 60
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 348 caatcaaactacacaacttgcaaacaagctgcaaccaaggcatggcc-tcccttccagag 290

                                                                       
Query: 61  atgtccctcgagtgacgggggctaacatggcaggccccaggtgaaagtaccccatcccat 120
           | |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 289 aagtccct-gagtgacgggggctaacatgg-aggccccaggtgaaagtaccccattccat 232

                                          
Query: 121 aacctcttaccttatgagaggaaaattccac 151
           |||||||||||||||||||||||||| ||||
Sbjct: 231 aacctcttaccttatgagaggaaaatcccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 548
Length adjustment: 8
Effective length of query: 143
Effective length of database: 540
Effective search space:    77220
Effective search space used:    77220
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)