BAC Information

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BAC

Clone NameMSMg01-063F21
Chromosome8 (Build37)
Map Location 47,537,216 - 47,537,776
singlet/doubletsinglet
Overlap genenone
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt
Downstream geneLOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063F21.T7 (MSMg01no063_f21.b1)MSMg01-063F21.TJ (MSMg01no063_f21.g1)
ACCAG289124AG289125
length668660
length of high quality
(start - end)
565 (31 - 595)286 (55 - 340)
definitionCHROMAT_FILE: MSMg01no063_f21.b1 PHD_FILE: MSMg01no063_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:42 2005CHROMAT_FILE: MSMg01no063_f21.g1 PHD_FILE: MSMg01no063_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATACGGAGAGATCCGCGGAATTCTCTATTTG
ATCTTTTAAGCATTTATTGAGAAGGATCCCCCTCCCCGTGGGTTTCGAAC
ACACAACACAACTTTATACACATCAGTAACAGTACTCCTATCAGACAGGG
TGAGAATCGGGACAGTGCTGAGTGTGGAGAAGATGTGGATCACGCCCAAC
ACATATCCCCCAGAATTCCTGTTGGCATGATTTGATAAACACTGGTATTT
TCTCTCTGTTCATGCAATGAAGCTGTCCATGAGATCCACCACTGTCACAG
CTCAGTAAATGCCTCTAATTATCTAATACTCAGACATGTGGAACTCATAA
TCATCTTTTGAGCTATAGGAGACAAATCAATAGACGTGTTACTCGAGTGA
CAGGGTGCCAGGGGCATCTGGCTTGGTAGAAACATCCTCCTGCAGTGTGC
CCATGTCTGATGGACAAAAGCCTACATATTTTCAATAATAAAAATTAGCA
ATCCCCTTAAAGAGAGTGTGTGAAGTGACGGAGAAGCGATATTTCTTTGC
TTTAAAGTAAAATATACGATAAAACAAAAGCCATCATATCGAAGCTGGAC
AAGACAAGCCTACAGAAAAATCAGAGCCCTGAGAGAAGGTACTCATTTAC
ATACTCAGAAGTCCCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTTGATTAATGATTGATGAGAGGACCTGGTTCCCTGTGGTGGTAG
CAACTCTGGGTAGGTTGTATAAGCAAACAAACTGAGCAAACTATGGGGAG
CAAGCTGGTTGACAATTCCTCCATGACCCTCCTGCCCTGATGTCCTGTCA
TGATAAACTGTAATGGGGACATGAGGCCACACACGTAAACCCTTTCCTCC
CCCAGTTGCTTTTGGCCATGATTTTTAACATAGCAGCAGAAACTTAACTA
GGACAAGTGAACTCATTCCTGTGATCCCAGCATTTGTTATACCAACGCAA
CAAAAGACTGGTGCAAGTTCAAGGCTACCCTGAGCTCCACAGTGGGCTCT
AAACCAGCCTCGACTACAGAGGTGGACCATCTTTAAAAAACGAGGCCAAG
CAAAACAAAACCCAGAAGCAACTCTTAGCACGCAGGCCTAACCCTGGTCC
AGTAGGCAGGTGGGAATTTTGTCCCGTATCTTTACGTGGCTGAGCAGCAC
TGGGATGACAGTGGCATTGGGTACCATACCCAGCCCTTCAGAGACAAGGC
CGTATGGAAGGACTCACCTCCAGAGCTTTGAGGCTGATGATTTCCACCCC
ACACTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_f21.b1 MSMg01no063_f21.b1 CHROMAT_FILE:
MSMg01no063_f21.b1 PHD_FILE: MSMg01no063_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:42 2005
         (565 letters)



>mm_chr8_47537010_47537976
          Length = 967

 Score =  988 bits (511), Expect = 0.0
 Identities = 549/563 (97%), Gaps = 6/563 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctc-tatttgatcttttaagcatttattgagaagg-atccccctccccgtgggtt 64
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 207 gaattctcatatttgatcttttaagcatttattgagaaggtatccccctccccgtgggtt 266

                                                                       
Query: 65  tcgaacacacaacacaactttatacacatcagtaacagtactcctatcagacagggtgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcgaacacacaacacaactttatacacatcagtaacagtactcctatcagacagggtgag 326

                                                                       
Query: 125 aatcgggacagtgctgagtgtggagaagatgtggatcacgcccaacacatatcccccaga 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatcgggacagcgctgagtgtggagaagatgtggatcacgcccaacacatatcccccaga 386

                                                                       
Query: 185 attcctgttggcatgatttgataaacactggtattttctctctgttcatgcaatgaagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attcctgttggcatgatttgataaacactggtattttctctctgttcatgcaatgaagct 446

                                                                       
Query: 245 gtccatgagatccaccactgtcacagctcagtaaatgcctctaattatctaatactcaga 304
           ||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||
Sbjct: 447 gtccatgagatccaccactatcacagctcagtaaattcctctaattttctaatactcaga 506

                                                                       
Query: 305 catgtggaactcataatcatcttttgagctataggagacaaatcaatagacgtgttactc 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 507 catgtggaactcataatcatcttttgagctgtaggagacaaatcaatagacgtgttactc 566

                                                                       
Query: 365 gagtgacagggtgccaggggcatctggcttggtagaaacatcctcctgcagtgtgcccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gagtgacagggtgccaggggcatctggcttggtagaaacatcctcctgcagtgtgcccat 626

                                                                       
Query: 425 gtctgatggacaaaagcctacatattttcaataataaaaattagcaatccccttaaagag 484
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 627 gtccgatggacaaaagcctacatattttcaataataaaaattagcaatccccttaa--ag 684

                                                                       
Query: 485 ag--tgtgtgaagtgacggagaagcgatatttctttgctttaaagtaaaatatacgataa 542
           ||  ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 685 agagtgtgtgaagtgacggagaagcaatatttctttgctttaaagtaaaatataggataa 744

                                  
Query: 543 aacaaaagccatcatatcgaagc 565
           |||||||||||||||||||||||
Sbjct: 745 aacaaaagccatcatatcgaagc 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 967
Length adjustment: 10
Effective length of query: 555
Effective length of database: 957
Effective search space:   531135
Effective search space used:   531135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)