Query= MSMg01no063_g02.b1 MSMg01no063_g02.b1 CHROMAT_FILE:
MSMg01no063_g02.b1 PHD_FILE: MSMg01no063_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:43 2005
(276 letters)
>mm_chr8_73124312_73124988
Length = 677
Score = 503 bits (260), Expect = e-147
Identities = 269/272 (98%), Gaps = 1/272 (0%)
Strand = Plus / Plus
Query: 6 gaattctgtggttccc-ctcatcccaagtggcctatgttctggtggcagggtggccgccc 64
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgtggctccaactcatcccaagtggcctatgttctggtggcagggtggccgccc 265
Query: 65 tctgttgcctcacaccccaaatatatgcagtcagtccttgccccaagggccccttctctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tctgttgcctcacaccccaaatatatgcagtcagtccttgccccaagggccccttctctc 325
Query: 125 catctcctgcactgtagttgcagtactctggatagggtccccagcccccaaacctcctta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 catctcctgcactgtagttgcagtactctggatagggtccccagcccccaaacctcctta 385
Query: 185 gaaggtcaagaaccaggcttgacaggctgtggggggaggggagagggtgcttacaggcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaaggtcaagaaccaggcttgacaggctgtggggggaggggagagggtgcttacaggcca 445
Query: 245 cttccgctgcctgttcctattctggctaccac 276
||||||||||||||||||||||||||||||||
Sbjct: 446 cttccgctgcctgttcctattctggctaccac 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space: 178356
Effective search space used: 178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no063_g02.g1 MSMg01no063_g02.g1 CHROMAT_FILE:
MSMg01no063_g02.g1 PHD_FILE: MSMg01no063_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:43 2005
(268 letters)
>mm_chr8_73235983_73236650
Length = 668
Score = 518 bits (268), Expect = e-151
Identities = 268/268 (100%)
Strand = Plus / Minus
Query: 1 ctgcatgtcaccctccctgctacattccagaccctctgaaggtggcaagctagatggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctgcatgtcaccctccctgctacattccagaccctctgaaggtggcaagctagatggaat 409
Query: 61 ggaggcgctagcgaaggggctgttctgcaaggagttctgagaggtacagctgtcctggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggaggcgctagcgaaggggctgttctgcaaggagttctgagaggtacagctgtcctggca 349
Query: 121 gcggaccctgggatagctcttggctaacacaatctgtgggtgctgtgggatcttggccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcggaccctgggatagctcttggctaacacaatctgtgggtgctgtgggatcttggccag 289
Query: 181 taactcatccagaagggacctgtgatggtcagtggcctggctcagggaatggggtggggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 taactcatccagaagggacctgtgatggtcagtggcctggctcagggaatggggtggggc 229
Query: 241 tgaggacacttgggggtgcttctcctgt 268
||||||||||||||||||||||||||||
Sbjct: 228 tgaggacacttgggggtgcttctcctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
