BAC Information

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BAC

Clone NameMSMg01-063K11
Chromosome8 (Build37)
Map Location 73,819,372 - 73,819,656
singlet/doubletsinglet
Overlap geneMyo9b
Upstream geneDdx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik
Downstream gene2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063K11.T7 (MSMg01no063_k11.b1)MSMg01-063K11.TJ (MSMg01no063_k11.g1)
ACCAG289338AG289339
length682676
length of high quality
(start - end)		289 (58 - 346)285 (56 - 340)
definitionCHROMAT_FILE: MSMg01no063_k11.b1 PHD_FILE: MSMg01no063_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:06 2005CHROMAT_FILE: MSMg01no063_k11.g1 PHD_FILE: MSMg01no063_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACACTCCTATACGGAGAGATCCGCGGAATTCATAAAATGA
CAGAAAGAAATAATACCGGCTCCTGGAAGTAGGTACAGTCAACATGGAAG
CAACCAACATATTTATGTTTCTCTTTTTAGATCGACTGACTTTAAGTGTG
TGAATGCTTTGCATGTGTATTTTGTCTGTGTCCCATGTGTGTGTGCTTCC
CACAGACACCAGAAGAGGTTATTTCACCCCCGGACTTGGTGTTCCAGAAT
TTTGTCTGCAAATGTTTATGTATTATAAATGAAACCCAGGTGCTAGGCAA
GAGCAATACTTGTTAAAAACTCATCAGCCCCCTTTTCTAGCTCCTATATT
GAATGCGCTCCTCACATGAAAATGATTAAAAGTATCATAAGGGAAAATAA
GTAGTCAGTCTTAAGATATTTTTAACTTCCTGGATCCAGGCCTCAGCCTT
CACATTTTACCTATTGAAGTCCAAAGGACTAATAGGCAGGGTGTGCACAA
TAGGAGGCTCGGTATGCTGGGCACACCTTTAATTCATGAACCCACAAATC
AGGCAGGATTGTCTTTGTCAGTTCAAAGACACCCTGTTCTTAATTGATAT
GAGGAGCAGAGGAAGGAAAGGTGAATTGTGGGTATCAAATGATAACTAAT
AGCAGTCAGCCCTTCTCCCTTCCACTTTTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTGTCTCTGAGGGTGACTCCGGGCAGTATTCAGGCAGGAGGTGA
TGCAGGGGACACTGGGCATTCTCAGGTGTTCTTGTGTCATGTCTACAGGA
GTGCTCCTGGCCCCTGGTGGAGGGAAGCTGGGAATGCTCAGAAGGACAGC
TCTGAGCACTGTGCAGGGAGCCCCTGAGCTGATGGGCACTGCATGAAGCA
TGCTGACTGCCCTCCATGGAGCTGGCTCTGCCTCGTCTAGAACCCAGCAT
GGCCACCAAGGTCTCCCCAGTTCAAAACTGCCAGAGACTGTGTTTCACGC
GCGCCCTCGCGGCTGAGGCCCGAGAAGGAAGCCAGCGGGACTGGTACCTG
ACTCTTACCAGTCACTACGTGACTGACAGTGACAATAGTCAGTGCTGTGC
CAGCATCACTGAGGGGCACTTCAGCGATGAATGAGGAGGCTGGTAGTGGC
TTCACCAGCACAAGAGAATGACAGGTCCTGAGACAATTATGGAGCTGGCC
ACTAACCCCTGAGAACAAAGCCACTGATTGTCACCTGTAGTTAGTCTATG
GGGGCCACTATGTATAAGTGTGTGACCCCCGCATAATTTACACTTTAACC
CTTTGGCCCACGATGTGACAGGTCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_k11.g1 MSMg01no063_k11.g1 CHROMAT_FILE:
MSMg01no063_k11.g1 PHD_FILE: MSMg01no063_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:06 2005
         (285 letters)



>mm_chr8_73819172_73819856
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtctctgagggtgactccgggcagtattcaggcaggaggtgatgcaggggacactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctgtctctgagggtgactccgggcagtattcaggcaggaggtgatgcaggggacactgg 426

                                                                       
Query: 61  gcattctcaggtgttcttgtgtcatgtctacaggagtgctcctggcccctggtggaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcattctcaggtgttcttgtgtcatgtctacaggagtgctcctggcccctggtggaggga 366

                                                                       
Query: 121 agctgggaatgctcagaaggacagctctgagcactgtgcagggagcccctgagctgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agctgggaatgctcagaaggacagctctgagcactgtgcagggagcccctgagctgatgg 306

                                                                       
Query: 181 gcactgcatgaagcatgctgactgccctccatggagctggctctgcctcgtctagaaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcactgcatgaagcatgctgactgccctccatggagctggctctgcctcgtctagaaccc 246

                                                        
Query: 241 agcatggccaccaaggtctccccagttcaaaactgccagagactg 285
           |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agcaaggccaccaaggtctccccagttcaaaactgccagagactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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