BAC Information

Click to search

BAC

Clone NameMSMg01-064M07
Chromosome8 (Build37)
Map Location 74,211,852 - 74,212,417
singlet/doubletsinglet
Overlap geneJak3
Upstream geneJund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a
Downstream geneInsl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064M07.T7 (MSMg01no064_m07.b1)MSMg01-064M07.TJ (MSMg01no064_m07.g1)
ACCAG290145AG290146
length1,2371,282
length of high quality
(start - end)
566 (89 - 654)333 (70 - 402)
definitionCHROMAT_FILE: MSMg01no064_m07.b1 PHD_FILE: MSMg01no064_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:57 2005CHROMAT_FILE: MSMg01no064_m07.g1 PHD_FILE: MSMg01no064_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGTCTTNNNNNNGCATTCGCGCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTCATTCAAAAACACTCACCCCTTAAGACTGTCAGGAGGTCAGGC
TAAGGCTTTCACAGCCCCTAAAAGCCCACAGTCAGGGGAGCAAGGGACTG
GGCACAGACCTGGAGTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTG
GCCAAGACTAGGGTGCTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGG
CAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGCAGAGCC
TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAA
GGAGTGGCCAGAGGGGATAAGGGGGTGATGGGGCCCAGAAAGGGACAGTT
TCCTGCCTGATGTCACACAGCCAGATCATAGGAACCAAGCTCACTCTCGC
CCCTGGCTGCTATCCGGGTCTTCCACGCCACAGCGCGTCCAGCTGGGGGC
TCAGGGTGCCGAAGGCTGGCCGGTCGTGCGGGCTGGGCGCCCAGCACAGC
TGCATGAGCTCCTGAACCTGGTGGTGGGAAGCAAGGTGGGGGGTGCCTGA
GCTGAGAGGCGTGTTTTCCACTCAGTTTAATGGTCCCCTACTCTTCTCCA
CAGCTCTCCATGGCTCCTTATGGATCTCTGAACAGAAACTAAGTTTGCCT
GTGGCAACACTCCTGCCCTGGTCTGCAGATGGTTAGGGTGACTGGTACAC
ATCCCCCATCTCGCCGCACATTTGCTTCTCTTACTCCATCCCAGTCCATA
GTCATGTTCTCCTACTGGGAATGACCTCTCCTGGATCCTCCTATATGCGC
CATTCACTCTGTTAATGGGTTGCGCCTCCCTTTCCTAACCCCCTCCCCCG
AATTATCTTGATCCGGGCGGGTGGTTGCCTATCATGAATATTACCCTGGT
TTTTTCTCTCTACTGTTTATAATCTTTACTATCTTTTTAACTCTTCTTTT
TTTTTTGTATTTTCTCTGTCGTTTTTTTTTCGATATCTTCATATTTTCCT
TTTTTTTACTCTCTATTATTTCTTTCTAATTCTTCTCTCTCATATTTCTC
ATATCATTTTTTTTCTTCCTATTTTTTATTCTTTTCTATTCTCTATCGTT
TTTTCTTTTTTTTTTTTTACCTTTAATCATTTATCTTTGTTTTTCTACCC
TTTTCACTTTATTACCCTCTACTTCTTTTCGTTTTTC
NNTTAAGACGGGAGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATCCCAGCACTTGGGAGGCAGAGGCAGGCA
GATTTCTGAGGTCTCGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAGGGCTGGAGC
ATTAGCAAAGTTAGCAAAGTTCTTACCCAGTGTGCATAAAGCCTGGTTCC
ATCCCCAGCACCACACCAACAAAGTCAAGAGGTTGAGGCAATATTGGGCA
TTCAGGGTCCTCCTCGGCTACATCTTGAGGCCAGCCTGGGCTACATGAAA
TTGTCTGATAAACACAAATATATGCACATGATAGAAAATAGCACCGGGCA
GTGTTGTCACATGCCAACACTTGGAAGGCAAAGGTAGGTGGATTTCAAAG
TTCGATGTTTTTTCCTCCCCCCCCAAGTGAGTTCCAGGACTGCCAAAAAA
AAAAAGAGAAACCCTGTCTCAAAAAAAAAAAACCAAAAAAACCAAAAAAC
AAAAAACCCTCTTGACCTCATGGACCACACACAACAGCTGTAGGTTGAAC
TTTTTAAAAGAGAAGTTCTGTGACCCCTTGGGTTATAGGACCAGGGAAAG
TGAGGTTGGGGTGCTAAAATAGGTACTACATGGTTGATTCCACAGTCCCC
CCCGCCCCCTGTCAAATGTCAATCTGTTTTACTGATTCCAAAAAAGTTAG
GGAATCTCCCATTTATAATTTAGCCAGCTCCCCGGTGTGCTCCCTGTCAG
TTTTGCCCCTACAAAGTACAGGCAAGCGTTTTCCGGGGCTCCCTTTCCGG
TGGAAAATTCCCCTTTTTTACCCCCTGGCCCCAATTCCAAAAGCTCTTTG
TGTCCAAAAAAAAATTATGTGTGTGAAATTAATGCCCCTGGTAAAACTTA
AATTGTTTTGTAATTAACTTATACTAATTGTAAAAATTAAAACCGTTTCT
GAATAACAGTTTTTGGATCCAATAGTAATCTTTCTTTACCCCTTTTTTCT
TTTTTTATATGTTTTTTACTCCGTAATTTCTACTGCTTCTTCCTCTTAAG
TATAAAGATAATTTCTAAACTTCTGTGTTCCACCTCTCTCATAATTTCTT
TCATTTTTTTCTCTCCTTAACTATATATTATCCTTCATCTCATATACATC
CTCAGTTTATTCTTATAATTCTCCCTCTATATTCTTACTATATTTATGTC
TTCTTATCCCTGCCTTATCCTACTCCTTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_m07.b1 MSMg01no064_m07.b1 CHROMAT_FILE:
MSMg01no064_m07.b1 PHD_FILE: MSMg01no064_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:57 2005
         (566 letters)



>mm_chr8_74211652_74212617
          Length = 966

 Score = 1071 bits (554), Expect = 0.0
 Identities = 563/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaggtcaggctaaggctttcacagcccctaaaagcccacagtcaggggagcaagggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aggaggtcaggctaaggctttcacagcccctaaaagcccacagtcaggggagcaagggac 707

                                                                       
Query: 61  tgggcacagacctggagtcaagagagggtttgggggtctgggtgggtttctggccaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgggcacagacctggagtcaagagagggtttgggggtctgggtgggtttctggccaagac 647

                                                                       
Query: 121 tagggtgctgctgggacatggggttctgagttttgcagaaggcagacgtgccagtaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tagggtgctgctgggacatggggttctgagttttgcagaaggcagacgtgccagtaaggc 587

                                                                       
Query: 181 atttccagaggtgctgacaaccgcgcagagcctggggtcacatatttaatatccccattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atttccagaggtgctgacaaccgcgcagagcctggggtcacatatttaatatccccattc 527

                                                                       
Query: 241 tgggaagaaagaatgatgggaaggagtggccagaggggataagggggtgatggggcccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgggaagaaagaatgatgggaaggagtggccagaggggataagggggtgatggggcccag 467

                                                                       
Query: 301 aaagggacagtttcctgcctgatgtcacacagccagatcataggaaccaagctcactctc 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaagggacagtttcctgcctgaggtcacacagccagatcataggaaccaagctcactctc 407

                                                                       
Query: 361 gcccctggctgctatccgggtcttccacgccacagcgcgtccagctgggggctcagggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gcccctggctgctatccgggtcttccacgccacagcgcgtccagctgggggctcagggtg 347

                                                                       
Query: 421 ccgaaggctggccggtcgtgcgggctgggcgcccagcacagctgcatgagctcctgaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccgaaggctggccggtcgtgcgggctgggcgcccagcacagctgcatgagctcctgaacc 287

                                                                       
Query: 481 tggtggtgggaagcaaggtggggggtgcctgagctgagaggcgtgttttccactcagttt 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 286 tggtggtgggaagcaaggtggggggtgcctgagctgagaggcgtggtttccactcagttt 227

                                     
Query: 541 aatggtcccctactcttctccacagc 566
           ||||| ||||||||||||||||||||
Sbjct: 226 aatggccccctactcttctccacagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)