Query= MSMg01no065_o13.b1 MSMg01no065_o13.b1 CHROMAT_FILE:
MSMg01no065_o13.b1 PHD_FILE: MSMg01no065_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:32 2005
(249 letters)
>mm_chr8_16073126_16073774
Length = 649
Score = 441 bits (228), Expect = e-128
Identities = 240/244 (98%)
Strand = Plus / Plus
Query: 6 ggaattccttccttcctaactggagaaaaagcatgaacaaatttgtttccatccctcttt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattccttccttcctaactggagaaaaagcatgaacaaatttgtttccatccctcttt 265
Query: 66 gcactgtgatgcttaattttaatgtaagcgagtaccagcaagtagtctctagctgcatat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcactgtgatgcttaattttaatgtaagcgagtaccagcaagtagtctctagctgcatat 325
Query: 126 gtatcagaagatggcctagtcagccatcagtggaaagagaggcccattggacttgcaaac 185
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 326 atatcaaaagatggcctagtcagccatcactggaaagagaggcccattggacttgcaaac 385
Query: 186 tttatatgcctcagtacaggggaatgccagggccaagaagtgggaatgggtgggtagggg 245
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 386 tttatatgcctcagtacaggggaatgccagggccaagaagagggaatgggtgggtagggg 445
Query: 246 agtg 249
||||
Sbjct: 446 agtg 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_o13.g1 MSMg01no065_o13.g1 CHROMAT_FILE:
MSMg01no065_o13.g1 PHD_FILE: MSMg01no065_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:32 2005
(341 letters)
>mm_chr8_16244372_16245111
Length = 740
Score = 569 bits (294), Expect = e-166
Identities = 309/314 (98%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 24 ctacaatgaacaataaagctagagataatgaaaatagaaacacagcagtaagaaatgtga 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 536 ctacaatgaacaataaagctagagataatgaaaatagaaacacagcagtaagaagtgtga 477
Query: 84 gctgtggctgcaggggattggagttacctgaacaagagacatctaaatagaatctccaga 143
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 476 gctgtggctgcaggggattggagttacctgaacaagtgacatctaaatagaatctccaga 417
Query: 144 gtgtggtgctagtgacataggacacagtggctgagttgttcacagatattgtggggcaca 203
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 416 gtgtggtgctggtgacataggacacagtggctgagttgttcacagatattgt-gggcaca 358
Query: 204 ggaaagttgacactgtgggggtcagaagtgcatcccccacctactctacctacttccctc 263
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 357 ggaaagttgacactgtgggggtcagaagtgcatcccccacctaccctacctacttccctc 298
Query: 264 tgagaggaaaaggcagagctgagaacacacactgaagaccacagcagaatccagagcaca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgagaggaaaaggcagagctgagaacacacactgaagaccacagcagaatccagagcaca 238
Query: 324 tgggcttgcactca 337
||||||||||||||
Sbjct: 237 tgggcttgcactca 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 740
Length adjustment: 9
Effective length of query: 332
Effective length of database: 731
Effective search space: 242692
Effective search space used: 242692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
