BAC Information

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BAC

Clone NameMSMg01-065P23
Chromosome8 (Build37)
Map Location 35,942,715 - 35,943,210
singlet/doubletsinglet
Overlap geneTnks
Upstream geneRbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578
Downstream geneLOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065P23.T7 (MSMg01no065_p23.b1)MSMg01-065P23.TJ (MSMg01no065_p23.g1)
ACCAG291075AG291076
length670755
length of high quality
(start - end)
495 (24 - 518)---
definitionCHROMAT_FILE: MSMg01no065_p23.b1 PHD_FILE: MSMg01no065_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:39 2005CHROMAT_FILE: MSMg01no065_p23.g1 PHD_FILE: MSMg01no065_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTCCTATTTTCGAAGACCGCGGATTCAGACATTTGACTCTTTCCTAAA
GATGAGGCTGTGTCACTTTGGAAATTGTGCTCTCTGAGGCTGTAAACTAC
CAGTTAACCTGCCCTGTAGCCCATCTGAGTTCACAGACGCTCACTAGGCA
GAGGCCTTAAGTGACAGCTGGTCTAGTCTGTCAGTGCAGTTGGGACCTTC
TCAAGGAATAAAACCAACAGGTTGTGTTTAAATTAATTCTTTGAAAAGAG
CTCTTCCTGGCTGAAAACTCAGTTTGATCTGGATGTAGCATCTGTTTGGT
TATCTAAGAAGAGATACTAACCAACAAAGGAATAGCCACCTCTTGTTCTG
TAAATAGTTGACACAATTGGAGGAGCTTGCTTCAAGAAGAGAGCAAGTGT
CTATCTTTCTGAGGGTTCTGGAGAAAATTCTTCTATGGGAAGAAAGTAGA
ATAAAGCTTGCTTTCCATATGTAGTCCATTCCTTGTCCTGTATCTCCAGG
CAGCTTCTGATACTAAGAAGACCATCAGTTCTGGGTGCTCATTGCAGTGG
TGTGGCCCCACTGTGGCTGTACTTCATTGCAGTGACCTGATAGTCTGAGC
ATGCCTTGCCACAGATACTAACTTACTTGCCACTCAGTCATAGCTGGCCA
TTTCGGAAAGGCCATTGTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTGTTCATGTTTAAAATAGTGCCAAGAAGATGAGGAGGTTCTG
GTCGACGTGTCCGTGTGACTGATGTGGGGGCTGATGGCTGGTGGCCGTGG
TCCCTCCCTTTTTTTCTCTTTTCCCTTCCTTTCCTTCCCTCTCTTTCTTC
TTTTTTCTTCCTTCCTCCCCCCCTTTTCCTCTCTCCTTCTCTCCCTCTCT
CTCTCCTTTTCTTTCTTCTTTTTCTCCTTTTTCTCCTCTCTCCCCCCTCT
CTCCCCCCCTCTTTTTTTTTCTCCTCTTTTCTCCCTCCCCCCTCCCTCTC
TTCCCTTTCTTTCCCCCTCCTCCTTCTCTTCTCTTCTTTTTCTCTTTCTT
CTTCCTCCTTCCCCTCCTCCGACTCCTTCTTTTCTTTTTTTTTCCTCTCC
TCCCTTTCCCCCCCCCCCTCCCTCCTTTCTTCTTTTTTTCTCCTTTTCCC
TCCTTTCCTCCTCCTTTCCCTTCTTCCCTCCCTTTTCCTTCCCTTCCTTC
CCCCCTCTTCCTCCTCTCCCCTTTTTCTTTTATTTTCTCCCCCTTCTCTC
TCCTCCCTTCTTTCTCTTTTTTCTTCTCTTCTCTCTTCTCTTCCTCCTTC
CTTTTCTTCCTTTCTCTTTCTTCCCTCCTCCCCTCCTCTCTTCCTTTCTC
CCCTTCTCTTTTTCCCCCTCTTCCTCCTTCCTCCCTCCATCTTTTTTCTC
TTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_p23.b1 MSMg01no065_p23.b1 CHROMAT_FILE:
MSMg01no065_p23.b1 PHD_FILE: MSMg01no065_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:39 2005
         (495 letters)



>mm_chr8_35942514_35943410
          Length = 897

 Score =  936 bits (484), Expect = 0.0
 Identities = 493/496 (99%), Gaps = 2/496 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   attcagacatttg-actctttcctaaagatgaggctgtgtcactttggaa-attgtgctc 59
           ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 697 attcagacatttgcattctttcctaaagatgaggctgtgtcactttggaagattgtgctc 638

                                                                       
Query: 60  tctgaggctgtaaactaccagttaacctgccctgtagcccatctgagttcacagacgctc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tctgaggctgtaaactaccagttaacctgccctgtagcccatctgagttcacagacgctc 578

                                                                       
Query: 120 actaggcagaggccttaagtgacagctggtctagtctgtcagtgcagttgggaccttctc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 actaggcagaggccttaagtgacagctggtctagtctgtcagtgcagttgggaccttctc 518

                                                                       
Query: 180 aaggaataaaaccaacaggttgtgtttaaattaattctttgaaaagagctcttcctggct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaggaataaaaccaacaggttgtgtttaaattaattctttgaaaagagctcttcctggct 458

                                                                       
Query: 240 gaaaactcagtttgatctggatgtagcatctgtttggttatctaagaagagatactaacc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaaaactcagtttgatctggatgtagcatctgtttggttatctaagaagagatactaacc 398

                                                                       
Query: 300 aacaaaggaatagccacctcttgttctgtaaatagttgacacaattggaggagcttgctt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aacaaaggaatagccacctcttgttctgtaaatagttgacacaattggaggagcttgctt 338

                                                                       
Query: 360 caagaagagagcaagtgtctatctttctgagggttctggagaaaattcttctatgggaag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caagaagagagcaagtgtctatctttctgagggttctggagaaaattcttctatgggaag 278

                                                                       
Query: 420 aaagtagaataaagcttgctttccatatgtagtccattccttgtcctgtatctccaggca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaagtagaataaagcttgctttccatatgtagtccattccttgtcctgtatctccaggca 218

                           
Query: 480 gcttctgatactaaga 495
           ||||||||||||||||
Sbjct: 217 gcttctgatactaaga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 897
Length adjustment: 10
Effective length of query: 485
Effective length of database: 887
Effective search space:   430195
Effective search space used:   430195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)