BAC Information

Click to search

BAC

Clone NameMSMg01-066A02
Chromosome8 (Build37)
Map Location 12,636,147 - 12,744,994
singlet/doubletdoublet
Overlap geneTubgcp3
Upstream gene1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik
Downstream geneAtp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066A02.T7 (MSMg01no066_a02.b1)MSMg01-066A02.TJ (MSMg01no066_a02.g1)
ACCAG291081AG291082
length688690
length of high quality
(start - end)
405 (47 - 451)379 (82 - 460)
definitionCHROMAT_FILE: MSMg01no066_a02.b1 PHD_FILE: MSMg01no066_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:40 2005CHROMAT_FILE: MSMg01no066_a02.g1 PHD_FILE: MSMg01no066_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,744,629 - 12,744,994)(12,636,147 - 12,636,525)
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCAGAGGATCCG
CGGAATTCTAAGTTTACTTTGTTGAACTAGCCCTGAGATTTCTAGTTCTA
ATCCAGTAAAATACTGAAAGAAAGCACAGAAAACCCTCCACCTATTGCAA
GGACAAATCTGGACTACATCCATGCTACGGGATGCCAAAGCCTCCAGGAG
ACCAGTTTCCGTGGAACTTTTCACCTCAGGACATTGGCCAAGCTTTTGGA
CTTGTCACGCAGAATCCACTGAAGTGGGTGTGGCATAGGAGTATTTATCT
ATCAGGATCATATGTAGGGCAACACTTAATACAGCTGGAGAGTCAGAATA
TTGAACAAGCAGGACAGTATCAGCGCTACACCAGCTACAACTAACCTTTG
GACAGACCGGTGTCCCACTAAAATGTCACTCTGAATACAGCAGCTGAATC
AAGAGTATAAGAGGGAAATCAAGGATTTAAGGATTAGTTAACAACCTGTG
GAAATCCTTGTTGATAGCTTCTGCTGTGATGTGGATCTGCAATGTCCCCC
ACAAACTCATGGGTTGACAGCTTTGTTTCCTACACAATAGCATCCAAAAT
GGCGCCTTTGTGAATTGAGTGCATCATGAAGAATCTGACCGTATGTATGA
ACTGCTCCACTTAAAGACTCATAACTAAACGCGATCTT
NCCCTCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGTCAAAGAACCTCCC
TAACAGTTCTCAGGCCCAGTGGACTTAAGACACAGCTCTGGGTGGCATTC
TGTGCGTGTGGCTTCCACAGGGTCACCACATCAAGGGATGTGATTGACCT
CACAGAAGGGACAGTCGTGAAGGCTAGAGCAGGGATTTTAGAGCCTAAGT
ATGCTTAGCAAACGTCCCCAATATTAAAAGAAACGCAATTTATTTCCCTA
GTACTTCAGATACAGAAACGACTAAGTCTCAGATCCACCCTAAAGAGAGA
ACATGAGCTGGAAAGGCAATTTAACCACGGACGTGTGGAGCTGACTCCTC
CAGCCCAGGTTCTGTGCTGCAGCAGGAGACTTGTCCTTCTTAGTGAGTGA
GCGAAGGAGCATGAGCAGCGTGACAGCTATCGGCTCATCAGCCCAGATGG
ATGTTAGATAGCAAATTTATCTAAGGAGGAAAAATGCCATTCCCCTAAAA
TATATTTTATGCTTCTTTTTCAATTATCCTAATTTAGTTGTTCCCGTCTA
ATAATACCGGTATATTATGCACCATGCATTTATTAAGTACTTTGCCGCAA
CTTGTGACAGAATATATGAAATTTCTAACACTTCTTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_a02.b1 MSMg01no066_a02.b1 CHROMAT_FILE:
MSMg01no066_a02.b1 PHD_FILE: MSMg01no066_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:40 2005
         (405 letters)



>mm_chr8_12744190_12744994
          Length = 805

 Score =  638 bits (330), Expect = 0.0
 Identities = 357/366 (97%)
 Strand = Plus / Minus

                                                                       
Query: 40  agatttctagttctaatccagtaaaatactgaaagaaagcacagaaaaccctccacctat 99
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 805 agatttctagttctaatccagtaaaatactgaaagaaagcacacaaaaccctccacctat 746

                                                                       
Query: 100 tgcaaggacaaatctggactacatccatgctacgggatgccaaagcctccaggagaccag 159
            ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 745 cgcaaggacaaatctggactacatccatgctatgggatgccaaggcctccaggagaccag 686

                                                                       
Query: 160 tttccgtggaacttttcacctcaggacattggccaagcttttggacttgtcacgcagaat 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttccgtggaacttttcacctcaggacattggccaagcttttggacttgtcacgcagaat 626

                                                                       
Query: 220 ccactgaagtgggtgtggcataggagtatttatctatcaggatcatatgtagggcaacac 279
           |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 ccactggagtgggtgtggcataggagtatttatctatcaggataatatgtagggcaacac 566

                                                                       
Query: 280 ttaatacagctggagagtcagaatattgaacaagcaggacagtatcagcgctacaccagc 339
           |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct: 565 ttaatacagctggagagtcagaatattgaacaagcaggacagcaccagcgctacactagc 506

                                                                       
Query: 340 tacaactaacctttggacagaccggtgtcccactaaaatgtcactctgaatacagcagct 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacaactaacctttggacagaccggtgtcccactaaaatgtcactctgaatacagcagct 446

                 
Query: 400 gaatca 405
           ||||||
Sbjct: 445 gaatca 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no066_a02.g1 MSMg01no066_a02.g1 CHROMAT_FILE:
MSMg01no066_a02.g1 PHD_FILE: MSMg01no066_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:40 2005
         (379 letters)



>mm_chr8_12635947_12636725
          Length = 779

 Score =  702 bits (363), Expect = 0.0
 Identities = 375/379 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagtcaaagaacctccctaacagttctcaggcccagtggacttaagacacagctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagtcaaagaacctccctaacagttctcaggcccagtggacttaagacacagctctgg 260

                                                                       
Query: 61  gtggcattctgtgcgtgtggcttccacagggtcaccacatcaagggatgtgattgacctc 120
           ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gtgacattctgtgcgtgtggcttccacaggatcaccacatcaagggatgtgattgacctc 320

                                                                       
Query: 121 acagaagggacagtcgtgaaggctagagcagggattttagagcctaagtatgcttagcaa 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaagggacagtcgtgaaggctagagcagggattttagagcctaagtatgcttagcaa 380

                                                                       
Query: 181 acgtccccaatattaaaagaaacgcaatttatttccctagtacttcagatacagaaacga 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 acgtccccaatattaaaagaaacgcaatttatttccctagcacttcagatacagaaacga 440

                                                                       
Query: 241 ctaagtctcagatccaccctaaagagagaacatgagctggaaaggcaatttaaccacgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaagtctcagatccaccctaaagagagaacatgagctggaaaggcaatttaaccacgga 500

                                                                       
Query: 301 cgtgtggagctgactcctccagcccaggttctgtgctgcagcaggagacttgtccttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtgtggagctgactcctccagcccaggttctgtgctgcagcaggagacttgtccttctt 560

                              
Query: 361 agtgagtgagcgaaggagc 379
           |||||||||||||||||||
Sbjct: 561 agtgagtgagcgaaggagc 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)