Query= MSMg01no066_h13.b1 MSMg01no066_h13.b1 CHROMAT_FILE:
MSMg01no066_h13.b1 PHD_FILE: MSMg01no066_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:16 2005
(461 letters)
>mm_chr8_50179636_50180496
Length = 861
Score = 818 bits (423), Expect = 0.0
Identities = 449/459 (97%), Gaps = 4/459 (0%)
Strand = Plus / Minus
Query: 5 gaattcactttcattactcattaagaatgcatgccatttgtattccttttaattcagaat 64
|||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaattcactttcgttactttttaggaatgcatgccatttgtattccttttaattcagaat 602
Query: 65 gtttcttaaggtagttgcccatgaaatagagttgccttgttttcaaacatatttgaggca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtttcttaaggtagttgcccatgaaatagagttgccttgttttcaaacatatttgaggca 542
Query: 125 taaactctttgccaaatattgtccactatggatatttctatgccatctaagatttgtcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taaactctttgccaaatattgtccactatggatatttctatgccatctaagatttgtcta 482
Query: 185 attttaaactataccttcaatgaatataacttggggaggtctaattatatcctgtttctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attttaaactataccttcaatgaatataacttggggaggtctaattatatcctgtttctt 422
Query: 245 tttatactttgtgcttcttatgtccattcttggaagtatatgccaaaataatttaaacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttatactttgtgcttcttatgtccattcttggaagtatatgccaaaataatttaaacat 362
Query: 305 ctttatatagtactggctctcaacttcaaatctgttgttaccttgagttaatttaattgc 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctttatatagtactggttctcaacttcaaatctgttgttaccttgagttaatttaattgc 302
Query: 365 atgtgtggagtg--gggaaggggttaatgtacttcttcatatacttctgtaccttttcta 422
||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 301 atgtgtg--gtgcagggaaggggttaatgtacttcttcatatacttctgtactttttcta 244
Query: 423 ctgtaatttattgataaattactcccttccaaattgaat 461
|||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctgtaatttattgataaattactcccttccaaattgaat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_h13.g1 MSMg01no066_h13.g1 CHROMAT_FILE:
MSMg01no066_h13.g1 PHD_FILE: MSMg01no066_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:16 2005
(329 letters)
>mm_chr8_50038341_50039069
Length = 729
Score = 520 bits (269), Expect = e-152
Identities = 325/357 (91%), Gaps = 28/357 (7%)
Strand = Plus / Plus
Query: 1 acttc-caaagtcttcttctgagcctcacaagagcacagtggatgtcctctgccatccat 59
||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 173 acttcacaaagtcttcttctgagcctcacaggagcacagtggatgtcctctgtcatccat 232
Query: 60 atgcacgcctgaccagttctggaaaccacaatacagtcatagtggacatgcagaagccca 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 233 atgcacgcctgaccagttctggaaacaacaatacagtcatagtggacatgcagaagccca 292
Query: 120 tggcaaggtagctcaaaatggagctggtgaggtggatagggaacagatggtacaaatact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tggcaaggtagctcaaaatggagctggtgaggtggatagggaacagatggtacaaatact 352
Query: 180 gtatgctgggctgaaatgttgattt-ttt-ttta---a---a---attt-ttt------- 220
||||||||||||||||||||||||| ||| |||| | | |||| |||
Sbjct: 353 gtatgctgggctgaaatgttgatttatttatttatttatttatttatttatttatttatt 412
Query: 221 --------tacaaaaagagcactggagtgtgcttactggactatgatttttgtccagcac 272
|||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 413 tatttatttacaaaaagagcactggagtgtgcttacaggactatgatttttgtccagcac 472
Query: 273 agataatgagctgcttaggagtctggtcaaggaaagctgggtgacaaacagggcagg 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agataatgagctgcttaggagtctggtcaaggaaagctgggtgacaaacagggcagg 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
