BAC Information

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BAC

Clone NameMSMg01-066P03
Chromosome8 (Build37)
Map Location 78,684,895 - 78,831,023
singlet/doubletdoublet
Overlap geneLOC100039185, EG631594
Upstream geneRasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
Downstream geneLOC666226, LOC100039211, LOC384847, Nr3c2, Arhgap10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066P03.T7 (MSMg01no066_p03.b1)MSMg01-066P03.TJ (MSMg01no066_p03.g1)
ACCAG291799AG291800
length703696
length of high quality
(start - end)		631 (48 - 678)550 (74 - 623)
definitionCHROMAT_FILE: MSMg01no066_p03.b1 PHD_FILE: MSMg01no066_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:54 2005CHROMAT_FILE: MSMg01no066_p03.g1 PHD_FILE: MSMg01no066_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,830,397 - 78,831,023)(78,684,895 - 78,685,444)
sequence
AAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCAATGTGACACCAAGAAAGCAGTAACCTAAACTTGAAAGT
CCAAGTGAGTTAAAGTCAATATACAACAGTAATGGATTTTAAAACAACAT
TACTGTATCAACGTACACTTCTACAGGCATGTATTTTTGCACACATTGTC
AACTCACTTAAGGCACAACTGTTTGATCCTAAGTTTTCTCCCTGTGAGAA
TTTAATTTATTATTTGCTCCAAAGGAAATACACATGGGGTTTGGGAGGCA
AGAGTGGTCACTGAACCCTACATGTCTGCAGGGCTCAATGCTGCTGCAGG
TCATGTGGGTCTTTGGCCATCTTCTGGTTCATCAGCAGGCTTGGGGATCA
AGAAGGATTTCACATCTTCTGATTCATACTGATTGATTTTCTGAAGTCAC
CCAGATCCTAGACCAGATGTACATGTGACTCATGGTAAAGGGCACCACTT
TTTTATTTGGTGATCTAGATTGTCAATGTTCTTTCCAGAATAAGGGAGAG
GAGAAGAGAAGGAAAGAGAAGAAAAAAGAGAAGAAATGAAAGGAGACGAT
AACAAAAGAAGAAACTCTGTATTTGGCTTTTCTATAATAACTCCATGGCT
TGGGACTGCTGTATTCTTGGAACCTTTCCAAGATTCACTTAGAGACCATA
AAT

CCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTTACCTGATGAACAATCTTTACCA
GTTCCCATCTTTTAATTAAGGAATGTAGTCTGCTTACATTCAAGGTTATT
ATTGAAGGTTAAAGAATTCTTCCTTTCACTTTGATGAATTTTCTTGGGTT
GCTTAGAATGTTTATTTTCCTTTAATTCTGATCATGCTTAGCTCATTGGC
CTGATTGTTTGCTGATATTCTAGTTTATTAAATAAGTTTTTTATACCTAT
GGCTTTACTTTTCTCATCTTTTGATATTGAAAAATGCACATACATTTTTG
ATTACTGAAGTTCTGTAGCTCTTAACGATTCTCCTCATTGTCTTCCTCTT
TGTCTCTCTCCGTTTCTCCTTTTCTCCTCCCCCCTTTCCCCCTTATTATC
CTCCATCCTTTTTCTCTTTCCCTTGACTGGAATATTTACAAAGACATGTC
ACCAATTTCAGGTATTCTCTTCCAGATCAGATACTACCGCTATGACTTTA
AGCTGTGAAAGACTCTGAGAGGAGCCCCTTGCTCAGGCCTCTGGACAATA
GCAGACACCCAAGAACTCATGAGAGACCAAGCTTGATGCAAACCGCATAA
GGCTTTATTCAGGGAAAGCCAGACCTCTGGGGACGATTCATATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_p03.b1 MSMg01no066_p03.b1 CHROMAT_FILE:
MSMg01no066_p03.b1 PHD_FILE: MSMg01no066_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:54 2005
         (631 letters)



>mm_chr8_78830326_78831356
          Length = 1031

 Score = 1181 bits (611), Expect = 0.0
 Identities = 623/627 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcaatgtgacaccaagaaagcagtaacctaaacttgaaagtccaagtgagtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattcactcaatgtgacaccaagaaagcagtaacctaaacttgaaagtccaagtgagtt 639

                                                                       
Query: 65  aaagtcaatatacaacagtaatggattttaaaacaacattactgtatcaacgtacacttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aaagtcaatatacaacagtaatggattttaaaacaacattactgtatcaacgtacacttc 579

                                                                       
Query: 125 tacaggcatgtatttttgcacacattgtcaactcacttaaggcacaactgtttgatccta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tacaggcatgtatttttgcacacattgtcaactcacttaaggcacaactgtttgatccta 519

                                                                       
Query: 185 agttttctccctgtgagaatttaatttattatttgctccaaaggaaatacacatggggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agttttctccctgtgagaatttaatttattatttgctccaaaggaaatacacatggggtt 459

                                                                       
Query: 245 tgggaggcaagagtggtcactgaaccctacatgtctgcagggctcaatgctgctgcaggt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 458 tgggaggcaagagtggtcactgaaccctacatgtctgcagggctcaatgctgctgcagat 399

                                                                       
Query: 305 catgtgggtctttggccatcttctggttcatcagcaggcttggggatcaagaaggatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 catgtgggtctttggccatcttctggttcatcagcaggcttggggatcaagaaggatttc 339

                                                                       
Query: 365 acatcttctgattcatactgattgattttctgaagtcacccagatcctagaccagatgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acatcttctgattcatactgattgattttctgaagtcacccagatcctagaccagatgta 279

                                                                       
Query: 425 catgtgactcatggtaaagggcaccacttttttatttggtgatctagattgtcaatgttc 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 278 catgtgactcatggtaaagggcatcacttttttatttggtgatctagattgtcaatgttc 219

                                                                       
Query: 485 tttccagaataagggagaggagaagagaaggaaagagaagaaaaaagagaagaaatgaaa 544
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 218 tttccagaataagggagaggagaagggaaggaaagagaagaaaaaagagaagaaatgaaa 159

                                                                       
Query: 545 ggagacgataacaaaagaagaaactctgtatttggcttttctataataactccatggctt 604
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ggagaagataacaaaagaagaaactctgtatttggcttttctataataactccatggctt 99

                                      
Query: 605 gggactgctgtattcttggaacctttc 631
           |||||||||||||||||||||||||||
Sbjct: 98  gggactgctgtattcttggaacctttc 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no066_p03.g1 MSMg01no066_p03.g1 CHROMAT_FILE:
MSMg01no066_p03.g1 PHD_FILE: MSMg01no066_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:54 2005
         (550 letters)



>mm_chr8_78684695_78685644
          Length = 950

 Score = 1033 bits (534), Expect = 0.0
 Identities = 546/550 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttacctgatgaacaatctttaccagttcccatcttttaattaaggaatgtagtctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttacctgatgaacaatctttaccagttcccatcttttaattaaggaatgtagtctgc 260

                                                                       
Query: 61  ttacattcaaggttattattgaaggttaaagaattcttcctttcactttgatgaattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacattcaaggttattattgaaggttaaagaattcttcctttcactttgatgaattttc 320

                                                                       
Query: 121 ttgggttgcttagaatgtttattttcctttaattctgatcatgcttagctcattggcctg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ttgggttgcttagaatgtttattttcctttaattctgctcatgcttagctcattggcctg 380

                                                                       
Query: 181 attgtttgctgatattctagtttattaaataagttttttatacctatggctttacttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtttgctgatattctagtttattaaataagttttttatacctatggctttacttttc 440

                                                                       
Query: 241 tcatcttttgatattgaaaaatgcacatacatttttgattactgaagttctgtagctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatcttttgatattgaaaaatgcacatacatttttgattactgaagttctgtagctctt 500

                                                                       
Query: 301 aacgattctcctcattgtcttcctctttgtctctctccgtttctccttttctcctccccc 360
           ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 501 aacaattctcctcattgtcttcctctttttctctctccgtttctccttttctcctcccac 560

                                                                       
Query: 361 ctttcccccttattatcctccatcctttttctctttcccttgactggaatatttacaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcccccttattatcctccatcctttttctctttcccttgactggaatatttacaaag 620

                                                                       
Query: 421 acatgtcaccaatttcaggtattctcttccagatcagatactaccgctatgactttaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatgtcaccaatttcaggtattctcttccagatcagatactaccgctatgactttaagc 680

                                                                       
Query: 481 tgtgaaagactctgagaggagccccttgctcaggcctctggacaatagcagacacccaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgaaagactctgagaggagccccttgctcaggcctctggacaatagcagacacccaag 740

                     
Query: 541 aactcatgag 550
           ||||||||||
Sbjct: 741 aactcatgag 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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