BAC Information

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BAC

Clone NameMSMg01-067C14
Chromosome8 (Build37)
Map Location 102,109,537 - 102,109,733
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik
Downstream geneLOC667531, LOC100042069, LOC436054, LOC100042078, LOC100042086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067C14.T7 (MSMg01no067_c14.b1)MSMg01-067C14.TJ (MSMg01no067_c14.g1)
ACCAG291965AG291966
length701686
length of high quality
(start - end)
311 (43 - 353)354 (72 - 425)
definitionCHROMAT_FILE: MSMg01no067_c14.b1 PHD_FILE: MSMg01no067_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:11 2005CHROMAT_FILE: MSMg01no067_c14.g1 PHD_FILE: MSMg01no067_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGTTTGGACTAAGATAAGTTATGAGATAATCATGCATATTGGGATGA
TTTCCTCAAATATTAAATGTTAACTTACCAAGCAACAGTATCGATACAAA
GTATCTTCTCATAATAATCAGGATGAGCTACACTTTCTTTTGACTAAAAG
TGTAGAACATGGACAAGTTACTTAAAATGACTGAATATAGATTTGCAAAC
TCAGAAACTCACTGTAAATACCTCTTCTTGGAAATTTAATAGAACAAGAA
ATATCTGTATTCAAAGTAACAAAAACATGTGTTTTATATTGATAATATAT
TACATATCATTGACTACGACCTCTAAAACATTAAAAATTCTTGCTGGATC
TATGAGAATCAGAGGTGCAAGACAAAGATATTGATGAATGGAAAAATGCA
TCTTAAGTATGAGAATATTCAGGGTAAGTTTGTTTCATTAAAATAAATTT
GTAGTTTAACATTCCCTGTAGTTTCTTTTATACAACCCTTGTCCCCTCCA
TCCAAATCCACCAACACTCTCTTCAATCTCTCCAATTGGTGTACTCTTTT
TATTTTATATGTGCATAAATATATGAGTATAATTGAAAGAGAAAAGTCTG
TGGAGGTAAAATGAATTATATACCAAGAAAATTTACCGATTCTCAAAAAT
G
NCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCCTATCTACAGTTGTTCATTTGGAAAA
ATTTATAGTCTTTTTTTAAAAAATCAATTTTGTATCCTTCTGTTATTCCT
GCCATTAGTATATAAATTTATATTCTTTTCCCATTGATTCCATATGCCTT
ATATATCACTTACTCTGGATTCTAATTTCTCTGTCTACTTATTTCTTCTG
TGCAGTGAACAAGCAGCCTTTTGAAAGCAGAAAGTTTTTATTTTTCAAAT
CTGATTACCAATCATAGGATGTATTCTTTAATGAATATTTGTTAATAATT
GCCTAAGGCCACTGAATATACATACTAAAGATTGTACCCAAAATGTGAAT
TAATGTTAACAAGAATAAATAAGATTAATAATCTATATTTAATCCAGCTG
GTATTAATTCATTGCAACAAATATGGAGTCTACTATATGTCAAACTTTGC
AGTGATTTCTGGGTATAAATTTCTGGGTATATGATCAAAACCAGGACATA
GTTCATACCCTTATAATTTTATGCTTAAAGAATAAGTATCAATGGTGACC
AGACAAATATGAAAAAGAACATTCCAGAAATAAGGAAAGCATGATCCAGC
GTCTAGTAATATGAATGTACTTGTCAATATTGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_c14.b1 MSMg01no067_c14.b1 CHROMAT_FILE:
MSMg01no067_c14.b1 PHD_FILE: MSMg01no067_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:11 2005
         (311 letters)



>mm_chr8_102109223_102109933
          Length = 711

 Score =  319 bits (165), Expect = 1e-91
 Identities = 187/197 (94%), Gaps = 5/197 (2%)
 Strand = Plus / Plus

                                                                       
Query: 120 taataatcaggatgagctacactttcttttgac-----taaaagtgtagaacatggacaa 174
           |||||||||| ||||||||||||||||||||||      |||||||||||||||||||||
Sbjct: 315 taataatcagaatgagctacactttcttttgacaagagcaaaagtgtagaacatggacaa 374

                                                                       
Query: 175 gttacttaaaatgactgaatatagatttgcaaactcagaaactcactgtaaatacctctt 234
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gttgcttaaaatgactgattatagatttgcaaactcagaaactcactgtaaatacctctt 434

                                                                       
Query: 235 cttggaaatttaatagaacaagaaatatctgtattcaaagtaacaaaaacatgtgtttta 294
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttggaaatttaataaaacaagaaatatctgtattcaaagtaacaaaaacatgtgtttta 494

                            
Query: 295 tattgataatatattac 311
           |||||||||||||||||
Sbjct: 495 tattgataatatattac 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)