BAC Information

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BAC

Clone NameMSMg01-068A01
Chromosome8 (Build37)
Map Location 33,270,692 - 33,325,154
singlet/doubletdoublet
Overlap geneEG666589
Upstream geneBC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik
Downstream geneEG546052, LOC100042715, LOC628408, EG628412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068A01.T7 (MSMg01no068_a01.b1)MSMg01-068A01.TJ (MSMg01no068_a01.g1)
ACCAG292601AG292602
length675678
length of high quality
(start - end)
605 (45 - 649)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no068_a01.b1 PHD_FILE: MSMg01no068_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:17 2005CHROMAT_FILE: MSMg01no068_a01.g1 PHD_FILE: MSMg01no068_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,324,554 - 33,325,154)(33,270,692 - 33,270,979)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAGCAGAAGGAGACATTGACTCTTGGAGGTTAAGGAACCCATCC
AAGTCAGCCAGTTGGTTCACGGCAAGTAGGAGATCCCAGTATCCTTGTTC
CTGGTTCAAAGCTCTCCCTGCCCTAAATCTTAGCATTTCATATGGTATTC
TTACTGCATTCTGTCCTTTGAGAATGTAGTATTCACTGATTTACTCGAAG
AAGTCTTGCCCCGTTCTATGATGGGCTGAGAAGGAAGCTAAACATCACTC
CACAGTTCCGTATACAGCTTTGTACCCATTCACACCAATGTCAAGTCAGC
CACCTTCTGTTCAGCTGCCTTTTCCTGACTCTAAACCCCCGGCTTCGTGA
CTGATTTCACTATTTCGTGTCAACAGTAGAGTAAAGTTCATCTGACTCAG
AGTAAGGGAAGTGGGCCAGGTGGCCAGGGTTGTGTAACACCTTCCTCACT
TGAGACAGGGCAAGAGTGAAGAGCCGAGGCTGCCTGCCATCACTGATGCT
GCACACAGAGGTGAAAAGTTCAAGGTCCCAGAAAACCCCTAGGCTGATAC
CCGCCGAAAAGCTACTTTGATTCTCTGAGAGTGAGCAGAGATGATGCTGG
CAGGAGAACCATAAGGTGTTCTCTT
AACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACGTCATTAGTAGAAACTCA
AGGCATGACCATTGCACAGCTGAGTGCTTCCAGGACAGACGTTACGGCAT
GAGCATGCAGCTCCACCACTCTGCTCCAAAGTCCATACTTATCTCTTGGT
TTAGCTTCTATCTAGGAAGAGTGATAGCATCTATCTAAAGGCTTTGGTGA
CAGTGTGAGGTTTAGGCAAAATCATGCATTCGGGGAGATGTCTAACTTCA
GAACGCCCTCTCATCTGAGGACTGTGAATGCCTTTTCATTTGGGAAGAAG
TCTTAAGCCCTGTTTCTCATAGCTGCCCGACCTGATTGTTCTCGAAGCTG
TACATTGCAGCTGATGGTAAGAGTCACCTTATTCATGCCATAAACTTGAT
ATTGACTTTCCCCCAAACAATATTCATTCTCTTGGTGAGCTATCTTATTG
GGACAGTTAAGTCACAGGAAAACAATGTAATGGCTTCTTTGGGGTACACA
TGTTGCGAAGTAGAACGGAGAGATAAGGCACTTTGGCTTGTCTTATTTTG
ATGTGTCCAAAGGATTGGGCAGCCATTTATTTGATATTCTTCTAAGACCT
GAAATACCAATTATTGTCACTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_a01.b1 MSMg01no068_a01.b1 CHROMAT_FILE:
MSMg01no068_a01.b1 PHD_FILE: MSMg01no068_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:17 2005
         (605 letters)



>mm_chr8_33324350_33325354
          Length = 1005

 Score = 1162 bits (601), Expect = 0.0
 Identities = 601/601 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttagcagaaggagacattgactcttggaggttaaggaacccatccaagtcagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattctttagcagaaggagacattgactcttggaggttaaggaacccatccaagtcagc 746

                                                                       
Query: 65  cagttggttcacggcaagtaggagatcccagtatccttgttcctggttcaaagctctccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagttggttcacggcaagtaggagatcccagtatccttgttcctggttcaaagctctccc 686

                                                                       
Query: 125 tgccctaaatcttagcatttcatatggtattcttactgcattctgtcctttgagaatgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgccctaaatcttagcatttcatatggtattcttactgcattctgtcctttgagaatgta 626

                                                                       
Query: 185 gtattcactgatttactcgaagaagtcttgccccgttctatgatgggctgagaaggaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtattcactgatttactcgaagaagtcttgccccgttctatgatgggctgagaaggaagc 566

                                                                       
Query: 245 taaacatcactccacagttccgtatacagctttgtacccattcacaccaatgtcaagtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaacatcactccacagttccgtatacagctttgtacccattcacaccaatgtcaagtca 506

                                                                       
Query: 305 gccaccttctgttcagctgccttttcctgactctaaacccccggcttcgtgactgatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccaccttctgttcagctgccttttcctgactctaaacccccggcttcgtgactgatttc 446

                                                                       
Query: 365 actatttcgtgtcaacagtagagtaaagttcatctgactcagagtaagggaagtgggcca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actatttcgtgtcaacagtagagtaaagttcatctgactcagagtaagggaagtgggcca 386

                                                                       
Query: 425 ggtggccagggttgtgtaacaccttcctcacttgagacagggcaagagtgaagagccgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtggccagggttgtgtaacaccttcctcacttgagacagggcaagagtgaagagccgag 326

                                                                       
Query: 485 gctgcctgccatcactgatgctgcacacagaggtgaaaagttcaaggtcccagaaaaccc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgcctgccatcactgatgctgcacacagaggtgaaaagttcaaggtcccagaaaaccc 266

                                                                       
Query: 545 ctaggctgatacccgccgaaaagctactttgattctctgagagtgagcagagatgatgct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaggctgatacccgccgaaaagctactttgattctctgagagtgagcagagatgatgct 206

            
Query: 605 g 605
           |
Sbjct: 205 g 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_a01.g1 MSMg01no068_a01.g1 CHROMAT_FILE:
MSMg01no068_a01.g1 PHD_FILE: MSMg01no068_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:17 2005
         (288 letters)



>mm_chr8_33270492_33271179
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacgtcattagtagaaactcaaggcatgaccattgcacagctgagtgcttccaggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacgtcattagtagaaactcaaggcatgaccattgcacagctgagtgcttccaggaca 260

                                                                       
Query: 61  gacgttacggcatgagcatgcagctccaccactctgctccaaagtccatacttatctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacgttacggcatgagcatgcagctccaccactctgctccaaagtccatacttatctctt 320

                                                                       
Query: 121 ggtttagcttctatctaggaagagtgatagcatctatctaaaggctttggtgacagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttagcttctatctaggaagagtgatagcatctatctaaaggctttggtgacagtgtg 380

                                                                       
Query: 181 aggtttaggcaaaatcatgcattcggggagatgtctaacttcagaacgccctctcatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtttaggcaaaatcatgcattcggggagatgtctaacttcagaacgccctctcatctg 440

                                                           
Query: 241 aggactgtgaatgccttttcatttgggaagaagtcttaagccctgttt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggactgtgaatgccttttcatttgggaagaagtcttaagccctgttt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)