BAC Information

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BAC

Clone NameMSMg01-068B22
Chromosome8 (Build37)
Map Location 10,935,151 - 10,935,466
singlet/doubletsinglet
Overlap genenone
Upstream geneLig4, Abhd13, Tnfsf13b, Myo16, LOC100040008, LOC384782, LOC100040507, LOC665306
Downstream geneIrs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068B22.T7 (MSMg01no068_b22.b1)MSMg01-068B22.TJ (MSMg01no068_b22.g1)
ACCAG292689AG292690
length712713
length of high quality
(start - end)
323 (44 - 366)254 (75 - 328)
definitionCHROMAT_FILE: MSMg01no068_b22.b1 PHD_FILE: MSMg01no068_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:26 2005CHROMAT_FILE: MSMg01no068_b22.g1 PHD_FILE: MSMg01no068_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCG
GAATTCTTACAGAGTGGGGTAAACATCACCTTTTCCCTAGTTGACCTGCT
CACGTTGAAAACACACCCACCCTTGCTGCGCTCGGATTACAAGTTTAGAC
TTGACCTTGAGCCAAGTTGCTTGTTTTCTGCTTCTTGCTGGGTTTTACAC
AGGAGGCGACTTGGGCGGACTGCTTGGACACAACTCAGGCCTCCTGTTTT
CCGGAGATGCATGTAGCCCAGGCGTATTTATTTTGATTAAGTGGTATTTA
ATGTGGCACAAGCATCTGCGAGGCCTTTTCGAACATTCCCCATTCTAAGA
GACGTGTCCATCGCCTGTTTTTTTTTCCCTTTCGNNCCGTAGGATGAGAT
CTGACGTCAACTTGTTTAATCCCTTGTTAGAACAAAAAAAATCCATGTGC
CCTGGGGGGTGGCTCAACACTAGAGGCAATCACGGTATGTTCTGGAGTAC
AGGTGGTCAGTCTTGAGCCTTGGAACTGTAACTTGTAGATTCGTGACATC
ACCATTTTGGGAAATGTTGACATGTAACTAACCCCTCATATCTGAAACAG
TACTGTGTGGCGTATCCTCCTTCTTCAGCCAGTTTCCAGTTACCTCTGGA
TCCCTGAATCCTTGAACTTTACATGAGTGTGACCTTTCCCTTTGTGACAT
CAAGTTTTCTTT
NNCCACGATGACTAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGCAATTCCTTCTTTATGTCCTCTACCATCA
TCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGG
TGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTG
GTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGC
AATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTC
TGTTGATTTTGTTACCCTCTATCAGCATGCGTGGGAGACAAGCTCTCTTC
TCTGAGTTTCTGTGGTCTTATTTTTCTCTGCCCCGCCGCTCTCCTCTCTC
AGGGAAGGTGTACAGTTATCTGGCGCTTGGACCTCCTCCTGTCTGAAGGT
GAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGA
AGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCCCGCCTGATAAGTTCTG
TGCCTCTTGTCCGGAAGGAGGCCGGCTGTCTGGAGCTGAGGTTGTCGCCG
CCTCTTAAGCTCTGTGGTTCTTGCCGGCAAAGTGGCTGGTTGTCTGGCAC
TGATTATGTCGCCGTCCCCGAATCTCTGTGACTCTTTCCCCCGTCTCTTT
ATCGTCTGGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_b22.b1 MSMg01no068_b22.b1 CHROMAT_FILE:
MSMg01no068_b22.b1 PHD_FILE: MSMg01no068_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:26 2005
         (323 letters)



>mm_chr8_10934944_10935666
          Length = 723

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcttacagagtggggtaaacatcaccttttccctagttgacctgctcacgttgaaa 67
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 523 gaattcttacagagtggggtaaacatcaccttttccctagttgacctgctcatgttgaaa 464

                                                                       
Query: 68  acacacccacccttgctgcgctcggattacaagtttagacttgaccttgagccaagttgc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acacacccacccttgctgcgctcggattacaagtttagacttgaccttgagccaagttgc 404

                                                                       
Query: 128 ttgttttctgcttcttgctgggttttacacaggaggcgacttgggcggactgcttggaca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttgttttctgcttcttgctgggttttacacaggaggcgacttgggcggactgcttggaca 344

                                                                       
Query: 188 caactcaggcctcctgttttccggagatgcatgtagcccaggcgtatttattttgattaa 247
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 caactcgggcctcctgttttccggagatgcatgtagcccaggcgtatttattttgattaa 284

                                                                       
Query: 248 gtggtatttaatgtggcacaagcatctgcgaggccttttcgaacattccccattctaaga 307
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 283 gtggtatttaatgtggcacaagcatctgcgaggccttttcgaacatgccccattctaaga 224

                           
Query: 308 gacgtgtccatcgcct 323
           ||||||||||||||||
Sbjct: 223 gacgtgtccatcgcct 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)