BAC Information

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BAC

Clone NameMSMg01-068I06
Chromosome8 (Build37)
Map Location 8,212,098 - 8,212,313
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039836, Efnb2, 9430010O03Rik, Tmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068I06.T7 (MSMg01no068_i06.b1)MSMg01-068I06.TJ (MSMg01no068_i06.g1)
ACCAG292992AG292993
length820832
length of high quality
(start - end)
216 (143 - 358)105 (191 - 295)
definitionCHROMAT_FILE: MSMg01no068_i06.b1 PHD_FILE: MSMg01no068_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:58 2005CHROMAT_FILE: MSMg01no068_i06.g1 PHD_FILE: MSMg01no068_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCCCCCCCTTTTTTTTCCCCTCTTTTTTTTTTTTTTTCTTTTTCCTT
CATGTCATAACGANTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTCGAAAACCGCGGAATTCTTTTCTTCTTTCCCCAGAAACACCTCTAT
TTCCTGCCTAAGTCATGGGCCACAGGCTTTTTACTTCATAGGTGATGTAT
CCATATAATACACAAGATATTCTCTCTATAGTTGTATTGTTGACTTTTCT
CAATGGTGATTGTATGTGGCGGTCTTTGAACTTACAGACAGTGTCTCCAT
CTGGAATAACAGCGTGTCAGCTATCCTCCACTGTAAATGTTCATGTTTTG
AACAGTGAGTGACTGAGTTTAGATGCATAGGGGCACTGATTATGTTATAA
CGTCTGGAATAAGACTTCAGTGAAGCATTTTCAATTACTTAGCTCTAGGC
TTTCTGGCGCCTTTATTACTAGGACTCGCACCACTTTATTAACTTATTTT
TCTTATATCCTGGTGATCATTCATGCTAACCATTGCTATAGCAAGCCCCT
TGTCTACAGTATTTACTTAGGCAATTATGATTCTATGATGTTCTACTCTC
TGCAGATTTTTCTGTGCTTTTATAAACATCACCAATTTCTCCCCTTAATT
TCATATATAAACCTCATTTGCACACTACCTTGGCTTTCTAGGTACCCCCT
CGTATGTTTATATCTATATTTCCTTTTTTGTGTATAATTTTCCCTTACGT
AGTGTAATTTTCCTTTTAAAGTATGCCCTTATATTCTTTCTCCACTCTCT
AGACCATTTTTTATATTTAA
TTTTTTTTTTTTNTTTTNTTTTTTTTTATTTTTTTTTCTTCCTCNNNCCN
CCCAAAAAATTTTTTTATCTATGAACTXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCAATTCTTGTGAAC
TCTAATCATGTTTATGGCCATTTTTCTTAAAGTAGATTGAAAATATATGT
AAAATATATATTGCAATAAAAATACTGCAATTAATAACTTAAAAGATATT
ATATATATATATACATATATATATATATATATCATTACTACAGTATCATC
AGGAACAAATATACATCCATATATATCAAAAATATTATTCTAGGAATTGA
AAAGTTATAACTTTTCATTACATACTGGTTTCAGCCTTGTATTTTCTAAA
AAGTTCAGTGAACTTACAGAGTGCGCAAAAATCTTGATTTTTATCACCCA
TGAAAGCTAATACTACGATCATCTCTATTAGTTTATTATGAACTACACAT
ATGACATTGTTTATTCCATTTCACTACATTTTACATAACTCTAATCTTGT
ATCTATAATGATTAATTGTCCCATCATCTCTGTAAATTACTGACATGAAA
TTAAAAATCTAGAATAATTTATTGTAGGATACACCCTCACCCACTCCCTT
TCTTTGCTATATTTTTTCCGATGCCTTAATAATCTCTTTTTGTTCTTTTA
CACATTCCGATTGATATCGATTCCTCCTGAAAACTTGTTATCGATATCAT
ATTTTTATTTCATCCTCAAACTTTCTCTTATTTGCTATTTATGTGTTATT
CTTAATATTACTTTTCTATGGCTAGTTCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_i06.b1 MSMg01no068_i06.b1 CHROMAT_FILE:
MSMg01no068_i06.b1 PHD_FILE: MSMg01no068_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:58 2005
         (216 letters)



>mm_chr8_8211810_8212425
          Length = 616

 Score =  379 bits (196), Expect = e-110
 Identities = 211/216 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctctatttcctgcctaagtcatgggccacaggctttttacttcataggtgatgtatcc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 504 acctctatttcctgcctaagtcacgggccacaggctttttacttcataggtgatgtatcc 445

                                                                       
Query: 61  atataatacacaagatattctctctatagttgtattgttgacttttctcaatggtgattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 atataatacacaagatattctctctatagttgtattgttgacttttctcaaaggtgattg 385

                                                                       
Query: 121 tatgtggcggtctttgaacttacagacagtgtctccatctggaataacagcgtgtcagct 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatgtggtggtctttgaacttacagacagtgtctccatctggaataacagcgtgtcagct 325

                                               
Query: 181 atcctccactgtaaatgttcatgttttgaacagtga 216
           ||||||||||| ||||||||| ||||||||||||||
Sbjct: 324 atcctccactggaaatgttcaggttttgaacagtga 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)