Query= MSMg01no068_n20.b1 MSMg01no068_n20.b1 CHROMAT_FILE:
MSMg01no068_n20.b1 PHD_FILE: MSMg01no068_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:26 2005
(317 letters)
>mm_chr8_118617554_118618269
Length = 716
Score = 514 bits (266), Expect = e-150
Identities = 300/312 (96%), Gaps = 3/312 (0%)
Strand = Plus / Minus
Query: 7 attctttctatggtatcccatcttccaa-atggcagctttgctctgcaacattgcctgga 65
|||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 516 attcgttctatggtaccccatcttccaacatggcagctttgctctgcaacattgcctgga 457
Query: 66 acataacgctggatgcctgaacacatgcccttctcctacaataaaaatgtttgcacgtgc 125
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acataacgctggatgcatgaacacatgcccttctcctacaataaaaatgtttgcacgtgc 397
Query: 126 atcactctctgaaagtttctctgcaatccgcaggaactggtgtctggatttgggctaggg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atcactctctgaaagtttctctgcaatccgcaggaactggtgtctggatttgggctaggg 337
Query: 186 agacttgcttagcgtatggagcagtggctgacccgcaggaatctgaacacccttttctct 245
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 336 agacttgcttagcatacggagcagtggctgacccacaggaatctgaacacccttttct-- 279
Query: 246 gttttctctctctcctactggggagcattcagctactcctcagactaggattctgagttg 305
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 278 gttttctctctctcctactggggagcattcagccactcctctgactaggattctgagttg 219
Query: 306 ctgttagttagc 317
||| ||||||||
Sbjct: 218 ctgatagttagc 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space: 217756
Effective search space used: 217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_n20.g1 MSMg01no068_n20.g1 CHROMAT_FILE:
MSMg01no068_n20.g1 PHD_FILE: MSMg01no068_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:26 2005
(468 letters)
>mm_chr8_118514558_118515425
Length = 868
Score = 659 bits (341), Expect = 0.0
Identities = 423/469 (90%), Gaps = 34/469 (7%)
Strand = Plus / Plus
Query: 1 tttgggtggtgaaatagagagggaacaggggaggagctgaaagaacggggagtactgttg 60
||||||||||||||||||||||||||||||||||||||||||| || |||| || |||||
Sbjct: 201 tttgggtggtgaaatagagagggaacaggggaggagctgaaagcacagggattattgttg 260
Query: 61 gaatccctctcctagcagtgatctccaggaactgactagatagcccaacttatttcttaa 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatccctctcctagcagtgatctctaggaactgactagatagcccaacttatttcttaa 320
Query: 121 catttaagcaaattatactcctatcaaaatccctcacttattttacaaataattcaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttaagcaaattatactcctatcaaaatccctcacttattttacaaataattcaaatt 380
Query: 181 atatctagttgaaatcaaaagtaattattcaagaagt-tatatgcaattataatgtcaat 239
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 381 atatctagttgaaatcaaaagtaattattcaagaa-tatatatgcaattataatgtcaat 439
Query: 240 gagttttaaagtttttatcacatttcttctttctttctttcttcctttctttctttcttt 299
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 440 gagttttaaagtttttatcacatttcttctttcttcctttctttctttctttctttcttt 499
Query: 300 cttccttccttccttccttccttccttccttccttccttccttccttccttccttccttc 359
||| ||| ||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct: 500 ctttctttctttctttcttccttccttccttccttccttccttcctt---tc-------- 548
Query: 360 caaccttccttcctttctttctttctttctttctttctttctttctttctttctttcttt 419
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 549 -------------tttctttctttctttctttctttctttctttctttcttcctttcttt 595
Query: 420 tttcctttggtgaatgtgtgtgtcccacacaatctagcctgtctgtgta 468
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ---c-----gtgaatgtgtgtgtcccacacaatctagcctgtctgtgta 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 106
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
