BAC Information

Click to search

BAC

Clone NameMSMg01-069D12
Chromosome8 (Build37)
Map Location 76,466,961 - 76,467,074
singlet/doubletsinglet
Overlap genenone
Upstream geneLarge, LOC100039001, LOC666134, Crry-ps, LOC666146
Downstream geneIsx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069D12.T7 (MSMg01no069_d12.b1)MSMg01-069D12.TJ (MSMg01no069_d12.g1)
ACCAG293527AG293528
length651771
length of high quality
(start - end)
112 (146 - 257)114 (131 - 244)
definitionCHROMAT_FILE: MSMg01no069_d12.b1 PHD_FILE: MSMg01no069_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:54 2005CHROMAT_FILE: MSMg01no069_d12.g1 PHD_FILE: MSMg01no069_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAATATTTTGTTTCGTCAAGATGCATTTTTTTAATAGGGTATTTGGTTTT
CTGGAGCAAACTTTGTGAGCTATTTATATATATTGGATAATAGCCCTCTA
TCAGATTTAGGATTGTTAAAGATCTTTTCCCAATAGGTTGATTGTCTTTT
TGTCTTACTGACAGTATCCTTTGCCTTACATAATCTTTGCAATTTTATGA
GGTCCCACTTGTCTTTTCTCAATCTTACATCACAAGCCATTGCTGTTTCC
CCTGTGCCCATTGTTTCTCTTCCCCACTTTCTCCTCTATAAGTTTCAGTG
CCTCTCGCTTTTTGTGGAGTTCTTTGATCCACTTATACCTGATCTTTGTA
CAATGACATAACATAGGATCAATTCACATTTTTCTACATGCTAATCACCA
GTTGTGCCAGCACCATTTGTTGAACAATGCTGTCTTTTTTCCACTGTATG
GTTTTACCTCCTTCCGTCAAGATTGCCATGTATTGCGCCCTCTCTGCCCC
ACATTTTCCTCCGTTATTTATCTTCTCACACCTATGCCCCCACACCTGCT
TTAATATGATCGCTTTACTCTCATTTGACACTTTGCGTCTGTTCCTTTTT
GCCCTTTTCACCCCGATTACCTTTCTTTTTTTTCCCCTAACACCACAACG
C
NNTTTTTTTTTTTTCTCTTTTTTTCTTTTTTTCCCCNTTTTNNTAATCCA
CCNNCCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCCACGAGGAATTCATTTATCTAAAGTTTGTT
GTCACTTCTTCCTGACTTAAAATTTGATCTCTAACACCAAATTGTCAGAA
CTTCTCACCGGTACTTATTCAAGCATCCGAACTGACCTGCTGGCAGCAGA
GAGATTCTATCTATTATCTATACTGGACCCTGTCCCTTGCTAAAACAGGG
TACTACTCTCATGCTTTGGCTCATATCAGCTCCAGTCCTAGGTATCATAG
ATCTGAAGAGAAAGCTCTAAATTTATAAAATAGCAAATGTACTTAACTTT
AAGTTTGGTTTTTTTTTTCTTACCCCACCCTCGCTATCCAAAGAGGAAAT
ATAAAAGAGATTATTTCCATCAACGCCAATCCTAATAAAATTGTTGGCAG
CCAATGCGCTAGGTAATGATAACAATTAAATGTAAGATAATTGATGCTTG
GAATTATGCTTTTTCAGTCTAAGGTTTCTTTATTCGCATGTTATCATGAT
GTTACTCTCTTAAAAGCGGCATTATGCTTTGTGAGACCTAAAACCACTCG
TATTACCCCGCTTATTATCTCATATACCCTAAATATTCCCTTGCCCCTAC
GCATCTTTTTAATGTGCGATTCCTGACTCAATACCACACACATAGGTGAA
GTTTGATTTCCCCCACGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_d12.g1 MSMg01no069_d12.g1 CHROMAT_FILE:
MSMg01no069_d12.g1 PHD_FILE: MSMg01no069_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:55 2005
         (114 letters)



>mm_chr8_76466761_76467274
          Length = 514

 Score =  197 bits (102), Expect = 1e-55
 Identities = 111/114 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttatctaaagtttgttgtcacttcttcctgacttaaaatttgatctctaacaccaa 60
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 314 tcatttacctaaagtttgttgtcatttcttcctgacttaaaatttgatctctaacaccaa 255

                                                                 
Query: 61  attgtcagaacttctcaccggtacttattcaagcatccgaactgacctgctggc 114
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 254 attgtcagaacttctcactggtacttattcaagcatccgaactgacctgctggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)