BAC Information

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BAC

Clone NameMSMg01-069E05
Chromosome8 (Build37)
Map Location 79,139,920 - 79,140,163
singlet/doubletsinglet
Overlap genenone
Upstream gene1700007B14Rik, LOC666036, LOC100039185, EG631594, LOC666226
Downstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069E05.T7 (MSMg01no069_e05.b1)MSMg01-069E05.TJ (MSMg01no069_e05.g1)
ACCAG293561AG293562
length702706
length of high quality
(start - end)
247 (61 - 307)232 (68 - 299)
definitionCHROMAT_FILE: MSMg01no069_e05.b1 PHD_FILE: MSMg01no069_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:58 2005CHROMAT_FILE: MSMg01no069_e05.g1 PHD_FILE: MSMg01no069_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCAATACGACTCACTATATCCAGAGATCCGCGGAATTCTGAATATGTTAC
TAAGAGAGCTGGTCCAACTAAAAGTTGTGTTATATTAATCGTTTTCATAT
AATTTTCCACCTGATATTTATATGGCAAAAAGAATATTTAGACTACACGA
AAATCTGGAAAAGGGGCTGGAGAGTTGTATCCAAAGTTAAGAGCACTCAC
TGCTCTTTCACAGGACAGGGGTTCAGTGCCCAACATTTACATGGAAGCTC
CCAAGTGCCTGAAACTCCAGGTACAGGCACTTGGCACATTTGTCTGGTCT
CTCTGTTCTTCAGGAAGGCACAAGGTGCACATGTATACGTGCATTTTTTT
TTCACACCCCCACCCCGAACTTATGTAAATCCTTCCTTAAAATCATGAAC
TAACGCTTCAAAACAAAACACGATAGCGATTGATCTCTCTACCCGGTATT
TTTGATGAACTCTTCACATACCTGCATTGCTTTTCATCAAATCTTAATAC
AGATTACTATCTTTACGCTCTACGATATAAAGCTTTATGCTATATATTTT
ACATCGGCGCGACATTCTTTATACCTTTTTTGCTCTTGCTCTGTTTTCGA
CCTCTTTCTTCCGTACCCCAATCATTTATGCTCCCGTACTGCACTACGCA
TTATGCTATTCCCATTTACCTACCTTCCCCCTTTTATATCGGTTCCTGCT
TT
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCCCCAGAAATTCAACATTCAGTTCTTATTAACAGAACAAGAT
TATTCAGCAAGTATATGACGCAGACACTTGTGGCTCTTTCCAACTAAAGA
ACCCCTCTCTACTGGGTTGGTCTCATGCAGCTTGTATTCTAATGCTAATT
TGGGGCCCCCAAAGAAGTGAGAGAGTAAATGTAAGATACTGAGTGACTCT
GCCCTCAGGTTGATTGTGATTGGTTAATAATGAGGCCAACAGCCAGTATC
TGGGGAGAAGATAAATTTTTGAGGTTGAGTTTTGGTGGGCTTAGAGAAAG
ATTATTTTTTTTTCCCCCCCCCCCCCCCCTTATGGAATATTCGTAAATTC
TGTTGGATCGCCCTCACTCTAAAAAAAATATAATGATCCGGTGAGAGGTG
TTCTTGTTGCTTGCTTTAGTGTACTTAATACCATTCCTTATTGACCTTTT
TACTTTATTATTCTCTCTTCCTGCCCATATCATCTGCGTTTGCTGTTTAT
CCCTTACCTGTATTCCAGCTTCTCTATCCTCTTATTTGTTCTTCCCCCTC
ATCATTTCTTCTTCCTTCTCCTTCCTTCTTCTCATCCGTCCTCTTCCCTC
CCTTACTTCATTTCCCCTTTCTGTCTGATCTCCTTTTCCCCCCCTTTCCC
CTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_e05.b1 MSMg01no069_e05.b1 CHROMAT_FILE:
MSMg01no069_e05.b1 PHD_FILE: MSMg01no069_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:58 2005
         (247 letters)



>mm_chr8_79139720_79140366
          Length = 647

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%), Gaps = 3/246 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtccaactaaaagttgtgttatattaatcgttttcatataattttccacctg-atattt 59
           |||||||||||||||||||||||||||||||||||||||| |||||  | ||| ||||||
Sbjct: 201 ggtccaactaaaagttgtgttatattaatcgttttcatatcattttg-agctgcatattt 259

                                                                       
Query: 60  atatggcaaaaagaatatttagactacacgaaaatctggaaaaggggctggagagttgta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atatggcaaaaagaatatttagactacacgaaaatctggaaaaggggctggagagttgta 319

                                                                       
Query: 120 tccaaagttaagagcactcactgctctttcacaggacaggggttcagtgcccaacattta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tccaaagttaagagcactcactgctctttcacaggacaggggttcagtgcccaacattta 379

                                                                       
Query: 180 catggaagctcccaagtgcctgaaactccaggtacaggcacttggcacatttgtctggtc 239
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 catggaagctcccaa-tgcctgaaactccaggttcaggcacttggcacatttgtctggtc 438

                 
Query: 240 tctctg 245
           ||||||
Sbjct: 439 tctctg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)