BAC Information

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BAC

Clone NameMSMg01-069E12
Chromosome8 (Build37)
Map Location 64,290,278 - 64,290,458
singlet/doubletsinglet
Overlap genePalld
Upstream gene2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, LOC100040872
Downstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069E12.T7 (MSMg01no069_e12.b1)MSMg01-069E12.TJ (MSMg01no069_e12.g1)
ACCAG293575AG293576
length704715
length of high quality
(start - end)
182 (76 - 257)49 (59 - 107)
definitionCHROMAT_FILE: MSMg01no069_e12.b1 PHD_FILE: MSMg01no069_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:59 2005CHROMAT_FILE: MSMg01no069_e12.g1 PHD_FILE: MSMg01no069_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGAACAATCCCTATTTAGTATTATATTTATTATTAGCCAGAAG
AAAATTTGAAATATGTTTGATGCCCCAAAATCATGTCACCAAGGCATGAA
AAATAAATTTTTATAGGGATCTAAACAGGATCTATTATTGTTGTTATTTT
CTCTAAATATTTATTTTAGAAATACTGGCTTGACTTTTTTCTATTTTTTT
TTTCTGAGAATATGTGTGCGTGTCTGTAGGGACAGTATATGTGTGTTGGC
ATATGTGTCTATGCATACTCTTGTTTAGAACAAATATTGATGTCCAGTAA
AACACAAAAGATTTCTAACTACCATCTCCCCCAGGTCCAGATGGATTCAT
AGCATAATCATACTAGACCGTCGAAGAAGATCTATAACCAATATTGCTCT
TTCTTTTTTACTTAACGAACCACATTTGGCGTTTCTAAATTGTTTTTACG
AACCCAGTATCACTCTAACTCCCAATTCCGTTCCAGATTTAATATTATCA
CCTATTCCTTTCCCCCTTATATTCACCCTTTTACTAATTTTCATTATACG
ATTTGCCTTTTTATTTCACCGAGTTTATTTTTTATTTTTCACTCGTGCAT
TTTACAACTTCATTCTATCCTTACTCTATTTGTTTCTCTTCCTCCCAATT
TGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTAAGTGTCTTTAAATGGAAAAATTTAGTCTAAAGGAGACCT
TTTACACACCAAAGTATTTTAAAGGAAATAATTTTGAAATTAAGTAACTC
AATATTATGCAGTTCATGTTAAGGCATATATTATCACATCTCCTGAGAAA
CAATGTTAACGCTAAGAAACTCCTGGAGTCATATATGATTACAAAATGTA
ACTGTTCTCATTAATATTTTTACCTGCCACGTGTCAAGAACAAAACCTCG
TATTCTTGTACCCGGCTCTTTTCTGTCTTCTTGTATTAATTTTAGTATTT
TCCCCCCCCCCCCCCCTTTGAATTGTTTTTATCCTATTCTGTTTCCTTAT
TTCTTCAAAAAAAATAAAAATATTCTTGTGGGGGGGGCGTGGCCCGTTCT
TATATTACTTACCCTTCAGCTCTCTACATTCCTTCTGTTCCCTCCTGTTA
TTCAATTTATATTCTCCTTTCTACATAATACTTTACAATTACATCCATCT
CATTTTCGCTCATCCCTATACTTTCCCTGCATCATATTCCCATTCTCCTT
TCTTCCTCGCATCCTTTTTTATTTCCTTACCTTTCCCCCTTTTTTCCTTC
CCCCTTTTCCCCTTACTTCTTATATATTATTAAAATTCCTTACTATTTTT
ATTTATTCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_e12.b1 MSMg01no069_e12.b1 CHROMAT_FILE:
MSMg01no069_e12.b1 PHD_FILE: MSMg01no069_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:59 2005
         (182 letters)



>mm_chr8_64290078_64290658
          Length = 581

 Score =  313 bits (162), Expect = 3e-90
 Identities = 177/182 (97%), Gaps = 1/182 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattatatttattattagccagaagaaaatttgaaatatgtttgatgccccaaaatcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 201 tattatatttattattagccagaagaaaatttgaaatatgtttgatgcaataaaatcatg 260

                                                                       
Query: 61  tcaccaaggcatgaaaaataaatttttatagggatctaaacaggatctattattgttgtt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tcaccaaggcatgaaaaataaatttttatagggatctaaacagggtctattattgttgtt 320

                                                                       
Query: 121 attttctctaaatatttattttagaaatactggcttgacttttttctattttttttttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 attttctctaaatatttattttagaaatactggcttgacttttttctattttttttt-ct 379

             
Query: 181 ga 182
           ||
Sbjct: 380 ga 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 581
Length adjustment: 8
Effective length of query: 174
Effective length of database: 573
Effective search space:    99702
Effective search space used:    99702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)